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Update spleen-fan JSONs
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@danqaurooni
danqaurooni committed Oct 3, 2024
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68 changes: 39 additions & 29 deletions staging/hubmap-spleen-fan-2023/registrations/spleen1.json
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@@ -1,39 +1,49 @@
{
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/928b0a83-fd10-4d44-a369-e46023d91e0b",
"@id": "http://purl.org/ccf/1.5/b5efb4f3-6dee-4a3c-b55f-91e6c40c6003",
"@type": "SpatialEntity",
"ccf_annotations": [
"http://purl.org/sig/ont/fma/fma15828",
"http://purl.org/sig/ont/fma/fma15837",
"http://purl.obolibrary.org/obo/UBERON_0001248",
"http://purl.org/sig/ont/fma/fma15839"
"http://purl.obolibrary.org/obo/UBERON_0010396",
"http://purl.obolibrary.org/obo/UBERON_0002194",
"http://purl.obolibrary.org/obo/UBERON_0010748",
"http://purl.obolibrary.org/obo/UBERON_0010397",
"http://purl.obolibrary.org/obo/UBERON_0002007",
"http://purl.obolibrary.org/obo/UBERON_0010417",
"http://purl.obolibrary.org/obo/UBERON_0002049",
"http://purl.obolibrary.org/obo/UBERON_0005457",
"http://purl.obolibrary.org/obo/UBERON_0005469",
"http://purl.org/sig/ont/fma/fma15828",
"http://purl.org/sig/ont/fma/fma15838",
"http://purl.org/sig/ont/fma/fma15837",
"http://purl.obolibrary.org/obo/UBERON_0001248",
"http://purl.org/sig/ont/fma/fma15839"
],
"creation_date": "2021-02-10",
"creator": "Marda Jorgensen",
"creator_first_name": "Marda",
"creator_last_name": "Jorgensen",
"creation_date": "2021-10-02",
"creator": "Hunter Hakimian",
"creator_first_name": "Hunter",
"creator_last_name": "Hakimian",
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/928b0a83-fd10-4d44-a369-e46023d91e0b_placement",
"@type": "SpatialPlacement",
"placement_date": "2021-02-10",
"rotation_order": "XYZ",
"rotation_units": "degree",
"scaling_units": "ratio",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMSpleen",
"translation_units": "millimeter",
"x_rotation": 5,
"x_scaling": 1,
"x_translation": 50.136666995719686,
"y_rotation": -15,
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"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/b5efb4f3-6dee-4a3c-b55f-91e6c40c6003_placement",
"@type": "SpatialPlacement",
"placement_date": "2021-10-02",
"rotation_order": "XYZ",
"rotation_units": "degree",
"scaling_units": "ratio",
"target": "http://purl.org/ccf/latest/ccf.owl#VHMSpleen",
"translation_units": "millimeter",
"x_rotation": -91,
"x_scaling": 1,
"x_translation": 68.877,
"y_rotation": -46,
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"z_rotation": -53,
"z_scaling": 1,
"z_translation": 31.63
},
"x_dimension": 10,
"y_dimension": 10,
"z_dimension": 10
}
"z_dimension": 12
}
66 changes: 39 additions & 27 deletions staging/hubmap-spleen-fan-2023/registrations/spleen3.json
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Original file line number Diff line number Diff line change
@@ -1,37 +1,49 @@
{
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/f87cbf39-cfd2-4ebc-8729-1fba1cf52851",
"@id": "http://purl.org/ccf/1.5/8959318d-4815-4b51-96f2-5a1096de49f3",
"@type": "SpatialEntity",
"ccf_annotations": [
"http://purl.org/sig/ont/fma/fma15828",
"http://purl.org/sig/ont/fma/fma15839"
"http://purl.obolibrary.org/obo/UBERON_0010396",
"http://purl.obolibrary.org/obo/UBERON_0002194",
"http://purl.obolibrary.org/obo/UBERON_0010748",
"http://purl.obolibrary.org/obo/UBERON_0010397",
"http://purl.obolibrary.org/obo/UBERON_0002007",
"http://purl.obolibrary.org/obo/UBERON_0010417",
"http://purl.obolibrary.org/obo/UBERON_0002049",
"http://purl.obolibrary.org/obo/UBERON_0005457",
"http://purl.obolibrary.org/obo/UBERON_0005469",
"http://purl.org/sig/ont/fma/fma15828",
"http://purl.org/sig/ont/fma/fma15838",
"http://purl.org/sig/ont/fma/fma15837",
"http://purl.obolibrary.org/obo/UBERON_0001248",
"http://purl.org/sig/ont/fma/fma15839"
],
"creation_date": "2021-02-11",
"creator": "Marda Jorgensen",
"creator_first_name": "Marda",
"creator_last_name": "Jorgensen",
"creation_date": "2021-10-02",
"creator": "Hunter Hakimian",
"creator_first_name": "Hunter",
"creator_last_name": "Hakimian",
"dimension_units": "millimeter",
"placement": {
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/f87cbf39-cfd2-4ebc-8729-1fba1cf52851_placement",
"@type": "SpatialPlacement",
"placement_date": "2021-02-11",
"rotation_order": "XYZ",
"rotation_units": "degree",
"scaling_units": "ratio",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFSpleen",
"translation_units": "millimeter",
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"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
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"@type": "SpatialPlacement",
"placement_date": "2021-10-02",
"rotation_order": "XYZ",
"rotation_units": "degree",
"scaling_units": "ratio",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFSpleen",
"translation_units": "millimeter",
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"z_translation": 22.661
},
"x_dimension": 10,
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}
"z_dimension": 12
}
68 changes: 39 additions & 29 deletions staging/hubmap-spleen-fan-2023/registrations/spleen4.json
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Original file line number Diff line number Diff line change
@@ -1,39 +1,49 @@
{
"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
"@id": "http://purl.org/ccf/1.5/d3416c86-078f-4c01-858c-f77892b237e1",
"@id": "http://purl.org/ccf/1.5/6febbcea-502d-466e-bb26-6e3eb8240902",
"@type": "SpatialEntity",
"ccf_annotations": [
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"http://purl.org/sig/ont/fma/fma15837",
"http://purl.obolibrary.org/obo/UBERON_0001248",
"http://purl.org/sig/ont/fma/fma15839"
],
"creation_date": "2021-02-11",
"creator": "Marda Jorgensen",
"creator_first_name": "Marda",
"creator_last_name": "Jorgensen",
"http://purl.obolibrary.org/obo/UBERON_0010396",
"http://purl.obolibrary.org/obo/UBERON_0002194",
"http://purl.obolibrary.org/obo/UBERON_0010748",
"http://purl.obolibrary.org/obo/UBERON_0010397",
"http://purl.obolibrary.org/obo/UBERON_0002007",
"http://purl.obolibrary.org/obo/UBERON_0010417",
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"http://purl.org/sig/ont/fma/fma15838",
"http://purl.obolibrary.org/obo/UBERON_0005457",
"http://purl.obolibrary.org/obo/UBERON_0005469"
],
"creation_date": "2022-06-06",
"creator": "Hunter Hakimian",
"creator_first_name": "Hunter",
"creator_last_name": "Hakimian",
"dimension_units": "millimeter",
"placement": {
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"@type": "SpatialPlacement",
"placement_date": "2021-02-11",
"rotation_order": "XYZ",
"rotation_units": "degree",
"scaling_units": "ratio",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFSpleen",
"translation_units": "millimeter",
"x_rotation": -2,
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"x_translation": 37.73812466503185,
"y_rotation": -3,
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"z_rotation": -39,
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"@context": "https://hubmapconsortium.github.io/hubmap-ontology/ccf-context.jsonld",
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"@type": "SpatialPlacement",
"placement_date": "2022-06-06",
"rotation_order": "XYZ",
"rotation_units": "degree",
"scaling_units": "ratio",
"target": "http://purl.org/ccf/latest/ccf.owl#VHFSpleenV1.1",
"translation_units": "millimeter",
"x_rotation": -91,
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"y_rotation": -46,
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"z_rotation": -53,
"z_scaling": 1,
"z_translation": 29.761
},
"x_dimension": 10,
"y_dimension": 10,
"z_dimension": 10
}
}

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