ColabFold

Making Protein folding accessible to all via Google Colab!

• AlphaFold2 - predict single domains, w/ MMseqs2 for MSA generation
• RoseTTAFold - predict single domains

Experimental notebooks:

• AlphaFold2_complexes - predict hetero or homodimers
• AlphaFold2_noTemplates_noMD
• AlphaFold2_noTemplates_yesMD

Acknowledgments

• Most of the python code was written by Sergey Ovchinnikov (@sokrypton). The API is hosted at the Södinglab (@SoedingL) and maintained by Milot Mirdita (@milot_mirdita). Martin Steinegger (@thesteinegger) integrated everything. Also credit to David Koes for his awesome py3Dmol plugin, without whom these notebooks would be quite boring!