Skip to content

Commit

Permalink
Update
Browse files Browse the repository at this point in the history
  • Loading branch information
nchenche committed Apr 6, 2021
1 parent 18eb565 commit 664b493
Show file tree
Hide file tree
Showing 101 changed files with 15,862 additions and 0 deletions.
Binary file added docs/img/icons/Logo_ORFtrack.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
File renamed without changes
File renamed without changes
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
196 changes: 196 additions & 0 deletions site/404.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,196 @@
<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">



<link rel="shortcut icon" href="/img/favicon.ico">
<title>ORFmine Documentation</title>
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Lato:400,700|Roboto+Slab:400,700|Inconsolata:400,700" />

<link rel="stylesheet" href="/css/theme.css" />
<link rel="stylesheet" href="/css/theme_extra.css" />
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/github.min.css" />
<link href="/css/extra.css" rel="stylesheet" />

<script src="/js/jquery-2.1.1.min.js" defer></script>
<script src="/js/modernizr-2.8.3.min.js" defer></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/highlight.min.js"></script>
<script>hljs.initHighlightingOnLoad();</script>

</head>

<body class="wy-body-for-nav" role="document">

<div class="wy-grid-for-nav">


<nav data-toggle="wy-nav-shift" class="wy-nav-side stickynav">
<div class="wy-side-scroll">
<div class="wy-side-nav-search">
<a href="/." class="icon icon-home"> ORFmine Documentation</a>
<div role="search">
<form id ="rtd-search-form" class="wy-form" action="//search.html" method="get">
<input type="text" name="q" placeholder="Search docs" title="Type search term here" />
</form>
</div>
</div>

<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
<ul>
<li class="toctree-l1"><a class="reference internal" href="/index.html">Home</a>
</li>
</ul>
<p class="caption"><span class="caption-text">ORFmine</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/orfmine_installation.html">Installation</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/orfmine_quickstart.html">Quick start</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/orfmine_citations.html">Citations</a>
</li>
</ul>
<p class="caption"><span class="caption-text">ORFtrack</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="#">ORFtrack presentation</a>
<ul>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_description.html">Aims and general description</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_orfdef.html">ORF definition</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_annotation.html">ORF annotation</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_overlap.html">Overlap definition</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_orf_extraction.html">ORF extraction</a>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="#">Usage</a>
<ul>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_input.html">Inputs</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_run.html">ORF annotation with ORFtrack</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/orfget_run.html">ORF extraction with ORFget</a>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="#">Parameters</a>
<ul>
<li class="toctree-l2"><a class="reference internal" href="/orftrack_param.html">ORFtrack parameters</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/orfget_param.html">ORFget parameters</a>
</li>
</ul>
</li>
</ul>
<p class="caption"><span class="caption-text">ORFold</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="#">ORFold presentation</a>
<ul>
<li class="toctree-l2"><a class="reference internal" href="/Objective_orfold.html">Objective</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/How_it_works_orfold.html">How it works?</a>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="#">Usage</a>
<ul>
<li class="toctree-l2"><a class="reference internal" href="/Run_orfold.html">Basic run ORFold</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/Plot_orfold.html">Plots with ORFplot</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/Run_orfold_advanced.html">Advanced run ORFold</a>
</li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="#">Parameters</a>
<ul>
<li class="toctree-l2"><a class="reference internal" href="/parameters_orfold.html">ORFold parameters</a>
</li>
<li class="toctree-l2"><a class="reference internal" href="/parameters_orfplot.html">ORFplot parameters</a>
</li>
</ul>
</li>
</ul>
</div>
</div>
</nav>

<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">


<nav class="wy-nav-top" role="navigation" aria-label="top navigation">
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="/.">ORFmine Documentation</a>
</nav>


<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="breadcrumbs navigation">
<ul class="wy-breadcrumbs">
<li><a href="/.">Docs</a> &raquo;</li>


<li class="wy-breadcrumbs-aside">

</li>
</ul>

<hr/>
</div>
<div role="main">
<div class="section">


<h1 id="404-page-not-found">404</h1>

<p><strong>Page not found</strong></p>


</div>
</div>
<footer>


<hr/>

<div role="contentinfo">
<!-- Copyright etc -->

</div>

Built with <a href="https://www.mkdocs.org/">MkDocs</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
</footer>

</div>
</div>

</section>

</div>

<div class="rst-versions" role="note" aria-label="versions">
<span class="rst-current-version" data-toggle="rst-current-version">



</span>
</div>
<script>var base_url = '/';</script>
<script src="/js/theme.js" defer></script>
<script src="/search/main.js" defer></script>
<script defer>
window.onload = function () {
SphinxRtdTheme.Navigation.enable(true);
};
</script>

</body>
</html>
Loading

0 comments on commit 664b493

Please sign in to comment.