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Update run_colab_template.sh
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Change default number of recycles to 3, consistent with the options of the runs described in our manuscript.
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jessica-andreani authored Nov 2, 2023
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2 changes: 1 addition & 1 deletion scripts/run_colab_template.sh
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Expand Up @@ -11,7 +11,7 @@ FASTA_FILE=$1 # change the name of the a3m file paired/mixed or other
export SINGULARITYENV_CUDA_VISIBLE_DEVICES=0 # Set to 0 or 1 to select a specific GPU card or remove the line
PARAMETERS='AlphaFold2-multimer-v2' # use PARAMETERS='AlphaFold2-ptm' for running the monomer-based parameters
NUMBER_OF_MODELS=5
NUMBER_OF_RECYCLES=6
NUMBER_OF_RECYCLES=3
NUMBER_OF_REPEATS=5 # changing the random seed

######### IN GENERAL, BELOW THIS LINE, DO NOT MODIFY UNLESS EXPERT USAGE
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