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Platypus to MOOSE migration #29633

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Platypus to MOOSE migration #29633

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refs #29632

alexanderianblair and others added 30 commits September 27, 2024 17:55
@alexanderianblair
Remove SetOperatorGridFunctions from ProblemBuilders
7d8bd90
@alexanderianblair
Move InitialiseKernels into MFEMProblem
a048698
@alexanderianblair
Move RegisterTimeDerivatives into MFEMTransient
324dd0c
@alexanderianblair
Remove ProblemBuilders
34a3167
@alexanderianblair
Rename platypus::Problem to platypus::ProblemData
666d5e4
@alexanderianblair
Move ProblemOperator methods from ProblemData into Executioners and m…
27b174c 
…ake ProblemData a struct
@alexanderianblair
Rename ProblemData to MFEMProblemData
06c34bf
@alexanderianblair
Add reference to MFEMProblemData in MFEMExecutioners
9ebfebe
@alexanderianblair
Store MFEMProblemData in MFEMProblem directly rather than a shared ptr
b4d2f29
@alexanderianblair
Remove coefficients member from MFEMProblem
2b9df0e
@alexanderianblair
Rename AddProblemBuilderAction to AddProblemOperatorAction
ebad88a
@alexanderianblair
Remove equation system getters from Executioners
5a2010b
@alexanderianblair
Remove std::move of EquationSystem in ProblemOperator constructors no…
d0668a1 
…w EquationSystem is owned by ProblemData
@alexanderianblair
Move mfem::Device into MFEMExecutioners to prevent segfaults on GPU d…
2311a11 
…uring destructor calls
@alexanderianblair
Add line break at EOF and clang-format MFEMExecutioner
37dad89
@alexanderianblair
Remove SetOperator from Executioners
9989a1a
@alexanderianblair
Remove unused GetOperator in Executioners, and update Executioner met…
837e977 
…hod names to match MOOSE style
@alexanderianblair
Move PropertiesManager into MFEMProblemData and remove redundant head…
3433edc 
…er inclusions in MFEMProblem
@alexanderianblair
Add comment explaining useage of time variables in MFEMSteady
151e378
@alexanderianblair
Remove friend class declarations and GLVis references from platypus::…
f2fc422 
…Outputs
@alexanderianblair
Merge pull request idaholab#29 from aurora-multiphysics/alexanderianb…
cb97882 
…lair/hephaestus-cleanup

Remove ProblemBuilders and clean up MFEMProblem
@Heinrich-BR
Created a FormSystem that takes inn assembly type
0ea68d8
@Heinrich-BR
Fixed MFEM deprecated warnings
3627106
@Heinrich-BR
Added new solvers that can be used with non-legacy assembly
8f29576
@Heinrich-BR
Added partial assembly diffusion test
ec80860
@Heinrich-BR
Fixed syncing issue on Device
a917b00
@Heinrich-BR
Included rectangular system check
20ef0a0
@Heinrich-BR
Linting
b81486a
@Heinrich-BR
Returned diffusion_partial.i test to CPU
d0c00c0
@Heinrich-BR
Changed preconditioner to GMRES for more code coverage
dd927a9
lindsayad and others added 28 commits January 14, 2025 13:55
@lindsayad @loganharbour
Ignore MFEM OutputData
fb3d668
@lindsayad @loganharbour
Ignore warnings around mfem includes
95522b3
@lindsayad @loganharbour
Eliminate compilation warnings from migrated platypus code
11bb1fe
@lindsayad @loganharbour
Make sure to get mfem tpl headers
a160ee1
@lindsayad @loganharbour
Add Platypus tasks/syntax to Moose.C if MFEM enabled
afbdb4b
@lindsayad @loganharbour
Change PlatypusApp object/action registration to MooseApp
afb8948
@lindsayad @loganharbour
Remove trailing whitespace from input files
74a7ebc
@lindsayad @loganharbour
whitespace/newline formatting
df4daec
@lindsayad @loganharbour
Remove non-unicode characters
d1c52da
@lindsayad @loganharbour
Remove catch-by-value polymorphic type warnings
7a66efe
@lindsayad @loganharbour
Wrap Platypus code with ifdefs
16e066c
@lindsayad @loganharbour
Add test spec options for mfem
f722e7d
@lindsayad @loganharbour
version check fixes
41051e1
@loganharbour
Add mfem submodule
b03d171 
refs #0
@loganharbour
Add conduit submodule
41b6259 
refs #0
@loganharbour
Add mfem install to moose-dev container
f97b0bb
@loganharbour
Update moose-dev
7641b18
@lindsayad @loganharbour
libmesh_dbg_var wrap manager param
fa95a29
@loganharbour
Resolve compiler warning: catch by ref
5668ebd
@lindsayad @loganharbour
Add missing includes for non-unity builds
ba37095
@lindsayad @loganharbour
Move mfem_kernels into mfem/kernels
3101955
@lindsayad @loganharbour
Delete trailing whitespace
5781296
@lindsayad @loganharbour
Remove non-unicode characters
a3d2595
@lindsayad @loganharbour
Guard with MFEM_ENABLED
1054e29
@lindsayad @loganharbour
Remove warnings
b88c9f2
@lindsayad @loganharbour
Use MooseUnit instead of Platypus
a16829b
@lindsayad @loganharbour
FuncionTest throws on function addition
b5fcd7e
@lindsayad @loganharbour
don't use cout
23d47ba
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Job Precheck, step Size check on 23d47ba wanted to post the following:

Warning: This PR changes repo size by 26.88 MiB.

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@loganharbour loganharbour loganharbour requested changes

@milljm milljm Awaiting requested review from milljm milljm will be requested when the pull request is marked ready for review milljm is a code owner

@roystgnr roystgnr Awaiting requested review from roystgnr roystgnr will be requested when the pull request is marked ready for review roystgnr is a code owner

@permcody permcody Awaiting requested review from permcody permcody will be requested when the pull request is marked ready for review permcody is a code owner

@cticenhour cticenhour Awaiting requested review from cticenhour cticenhour will be requested when the pull request is marked ready for review cticenhour is a code owner

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8 participants
@lindsayad @moosebuild @loganharbour @alexanderianblair @Heinrich-BR @k-collie @cmacmackin @nmnobre