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WIP: Update parameter.add_data() functionality #112

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WIP: Update parameter.add_data() functionality #112

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Commits on Sep 30, 2024

  1. Make creation information a mixin

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  2. Make name column a mixin

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  3. Make optimization columns mixins 

    * Covers:
* run__id, data, name, uniqueness of name together with run__id
* Adapts tests since default order of columns changes
    @glatterf42
    glatterf42 committed Sep 30, 2024
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  4. Inherit mixin requirements directly

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  5. Include optimization parameter basis (#79) 

    * Make Column generic enough for multiple parents
* Introduce optimization.Parameter
* Add tests for add_data
* Enable remaining parameter tests (#86)
* Enable remaining parameter tests
* Include optimization parameter api layer (#89)
* Bump several dependency versions
* Let api/column handle both tables and parameters
* Make api-layer tests pass
* Include optimization parameter core layer (#90)
* Enable parameter core layer and test it
* Fix things after rebase
* Ensure all intended changes survive the rebase
* Adapt data validation function for parameters
* Allow tests to pass again
    @glatterf42
    glatterf42 committed Sep 30, 2024
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  6. Fix references to DB filters in docs

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  7. Streamline naming in tests

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  8. Fix and test parameter list and tabulate for specific runs

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  9. Include Run-side of relationship

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  10. Make indexset-creation a test utility

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  11. Make new tests more efficient

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  12. Incorporate changes from #110

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  13. Use pandas for updated add_data behaviour

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  14. Remove superfluous session.add() for parameter

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  15. Use core layer in core test

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  16. Raise minimum pandas version to enable add_data upsert

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  17. Generalize UsageError for more optimization items

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  18. Use generalized UsageError for Table

    @glatterf42
    glatterf42 committed Sep 30, 2024
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  19. Use own errors for Parameter

    @glatterf42
    glatterf42 committed Sep 30, 2024
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Commits on Oct 1, 2024

  1. Make optimization columns mixins 

    * Covers:
* run__id, data, name, uniqueness of name together with run__id
* Adapts tests since default order of columns changes
    @glatterf42
    glatterf42 committed Oct 1, 2024
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  2. Inherit mixin requirements directly

    @glatterf42
    glatterf42 committed Oct 1, 2024
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    85c0bc2 View commit details
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  3. Include optimization parameter basis (#79) 

    * Make Column generic enough for multiple parents
* Introduce optimization.Parameter
* Add tests for add_data
* Enable remaining parameter tests (#86)
* Enable remaining parameter tests
* Include optimization parameter api layer (#89)
* Bump several dependency versions
* Let api/column handle both tables and parameters
* Make api-layer tests pass
* Include optimization parameter core layer (#90)
* Enable parameter core layer and test it
* Fix things after rebase
* Ensure all intended changes survive the rebase
* Adapt data validation function for parameters
* Allow tests to pass again
    @glatterf42
    glatterf42 committed Oct 1, 2024
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  4. Fix typo in docs

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  5. TEMPORARY Add test-parameter.data creation helper script

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  6. Add test-parameter.data as csvs

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  7. Add test-parameter.data as fixture

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  8. Handle SQL events for temp tables

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  9. Add option to filter columns by optimization_item.id

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  10. Add equation__id and variable__id to column filtering 

    * Disable those until their PRs are merged
    @glatterf42
    glatterf42 committed Oct 1, 2024
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  11. Add parameter.data validation for in-DB use

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  12. Introduce new add_data() 

    * Update to pandas workflow
* New in-DB functionality for testing
    @glatterf42
    glatterf42 committed Oct 1, 2024
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  13. Add benchmark test for parameter.add_data comparison

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  14. Add duplicate test for in-DB parameter.add_data

    @glatterf42
    glatterf42 committed Oct 1, 2024
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  15. Add 1e6 value benchmark

    @glatterf42
    glatterf42 committed Oct 1, 2024
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