Adapt to new RTD configuration style #1411
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| name: Test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # 05:00 UTC = 06:00 CET = 07:00 CEST | |
| schedule: | |
| - cron: "0 5 * * *" | |
| # Cancel previous runs that have not completed | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| GAMS_VERSION: 25.1.1 | |
| # See description in lint.yml | |
| depth: 100 | |
| jobs: | |
| pytest: | |
| strategy: | |
| matrix: | |
| os: | |
| - macos-latest | |
| - ubuntu-latest | |
| - windows-latest | |
| python-version: | |
| - "3.7" # Earliest version supported by message_ix | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" # Latest version supported by message_ix | |
| # Below this comment are newly released or development versions of | |
| # Python. For these versions, binary wheels are not available for some | |
| # dependencies, e.g. llvmlite, numba, numpy, and/or pandas. Compiling | |
| # these on the job runner requires a more elaborate build environment, | |
| # currently out of scope for the message_ix project. | |
| # - "3.12.0-alpha.1" # Development version | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| name: ${{ matrix.os }}-py${{ matrix.python-version }} | |
| steps: | |
| - name: Check out message_ix | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: ${{ env.depth }} | |
| - name: Fetch tags (for setuptools-scm) | |
| run: git fetch --tags --depth=${{ env.depth }} | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| cache-dependency-path: "**/pyproject.toml" | |
| - name: Set RETICULATE_PYTHON | |
| # Use the environment variable set by the setup-python action, above. | |
| run: echo "RETICULATE_PYTHON=$pythonLocation" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: ts-graphviz/[email protected] | |
| with: | |
| macos-skip-brew-update: true | |
| - uses: r-lib/actions/setup-r@v2 | |
| id: setup-r | |
| - name: Cache GAMS installer, Python packages, and R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| gams | |
| ${{ env.R_LIBS_USER }} | |
| key: ${{ matrix.os }}-gams${{ env.GAMS_VERSION }}-R${{ steps.setup-r.outputs.installed-r-version }} | |
| restore-keys: | | |
| ${{ matrix.os }}-gams${{ env.GAMS_VERSION }}- | |
| ${{ matrix.os }}- | |
| - uses: iiasa/actions/setup-gams@main | |
| with: | |
| version: ${{ env.GAMS_VERSION }} | |
| license: ${{ secrets.GAMS_LICENSE }} | |
| - name: Install Python package and dependencies | |
| # By default, the below installs ixmp from the main branch. To run against | |
| # other code, e.g. other branches for open PRs), temporarily edit as | |
| # appropriate. DO NOT merge such changes to `main`. | |
| run: | | |
| pip install --upgrade "ixmp @ git+https://github.com/iiasa/ixmp.git@main" | |
| pip install .[tests] | |
| - name: Install R dependencies and tutorial requirements | |
| run: | | |
| install.packages("remotes") | |
| remotes::install_cran( | |
| c("dplyr", "IRkernel", "reticulate"), | |
| dependencies = TRUE, | |
| # force = TRUE, | |
| ) | |
| IRkernel::installspec() | |
| shell: Rscript {0} | |
| - name: Run test suite using pytest | |
| env: | |
| # For test_cli.test_dl; see code in message_ix.cli.dl | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # Work around iiasa/ixmp#411 | |
| run: | | |
| pytest message_ix \ | |
| -m "not nightly" \ | |
| -rA --verbose --color=yes --durations=20 \ | |
| --cov-report=xml \ | |
| --numprocesses=auto --dist=loadgroup || ( [ $? -eq 127 -a "${{ runner.os }}" = "Windows" ] && echo "Spurious exit code 127 from pytest" && exit 0) | |
| shell: bash | |
| - name: Test documentation build using Sphinx | |
| if: ${{ startsWith(matrix.os, 'ubuntu') }} | |
| env: | |
| # For pull_request triggers, GitHub creates a temporary merge commit | |
| # with a hash that does not match the head of the branch. Tell it which | |
| # branch to use. | |
| SPHINXOPTS: -D linkcode_github_remote_head=${{ github.head_ref }} | |
| run: make --directory=doc html | |
| - name: Upload test coverage to Codecov.io | |
| uses: codecov/codecov-action@v3 |