remove assets #36
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| name: auto-hmmer | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.x | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y build-essential gcc python3 python3-pip | |
| pip install wget | |
| pip install biopython | |
| tar -xvf hmmer.tar.gz | |
| cd hmmer-3.3.2 | |
| ./configure | |
| make | |
| sudo make install | |
| export PATH="$PATH:~/hmmer-3.3.2/bin" | |
| cd .. | |
| - name: Run program | |
| run: python3 main.py | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: result | |
| path: | | |
| model.hmm | |
| PFseed.txt | |
| result.out | |
| id_list.txt | |
| protein_for_target_id.fasta |