[AUTO] update cube_preprocessing #230
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…ter 1950, and Animalia or Plantae
…issing-from-be_alientaxa_cube
SanderDevisscher
requested changes
Aug 12, 2024
…issing-from-be_alientaxa_cube
…issing-from-be_alientaxa_cube
…issing-from-be_alientaxa_cube
SanderDevisscher
requested changes
Feb 4, 2025
| #Load the be_alientaxa_cube, GRIIS checklist, and shapefile of Belgium | ||
| #------------------------------------------------------------------------- | ||
| be_alientaxa_cube <- read_csv( | ||
| file = "https://zenodo.org/records/10527772/files/be_alientaxa_cube.csv?download=1", |
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switch to artifact use "./cube_data/be_alientaxa_cube.csv"
| wk::wk_orient()#Due to changes in GBIF’s polygon interpretation, you might get an error when using polygons wound in the “wrong direction” (clockwise, i.e., default of sf). Reorient the polygon using the wk package | ||
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| #Read taxonomic info of alien cube | ||
| data_file <- here::here( |
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no longer updated! If this is needed this should be add to the get_occ_cube flow. Else delete logic to read it from script.
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Brief description
This is an automatically generated PR.
The following steps are all automatically performed:
df_timeseries.rDatato the UAT bucket.df_timeseries.rDatais combined withgrid.RDatafrom the UAT bucket usingalienSpecies::createTimeseries(). The result is also stored on the UAT bucket.Note to the reviewer: the workflow automation is still in a development phase.
Please, check the output thoroughly before merging to
main.run_occurrence_indicators_preprocessing.r downloads
./data/interim/intersect_EEA_ref_grid_protected_areas.tsvfromtrias-project/indicatorsthen it runs./src/05_occurrence_indicators_preprocessing.Rmdbased on the script from trias-project/indicators/.