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removed unused references in paper.bib
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conorheins committed May 2, 2022
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Expand Up @@ -42,29 +42,6 @@ @article{10.1162/neco_a_01427
eprint = {https://direct.mit.edu/neco/article-pdf/33/10/2710/1963501/neco\_a\_01427.pdf},
}

@Article{ harris2020array,
title = {Array programming with {NumPy}},
author = {Charles R. Harris and K. Jarrod Millman and St{\'{e}}fan J.
van der Walt and Ralf Gommers and Pauli Virtanen and David
Cournapeau and Eric Wieser and Julian Taylor and Sebastian
Berg and Nathaniel J. Smith and Robert Kern and Matti Picus
and Stephan Hoyer and Marten H. van Kerkwijk and Matthew
Brett and Allan Haldane and Jaime Fern{\'{a}}ndez del
R{\'{i}}o and Mark Wiebe and Pearu Peterson and Pierre
G{\'{e}}rard-Marchant and Kevin Sheppard and Tyler Reddy and
Warren Weckesser and Hameer Abbasi and Christoph Gohlke and
Travis E. Oliphant},
year = {2020},
month = sep,
journal = {Nature},
volume = {585},
number = {7825},
pages = {357--362},
doi = {10.1038/s41586-020-2649-2},
publisher = {Springer Science and Business Media {LLC}},
url = {https://doi.org/10.1038/s41586-020-2649-2}
}

@misc{heins2022pymdp_arxiv,
title={pymdp: A Python library for active inference in discrete state spaces},
author={Heins, Conor and Millidge, Beren and Demekas, Daphne and Klein, Brennan and Friston, Karl and Couzin, Iain and Tschantz, Alexander},
Expand All @@ -74,15 +51,6 @@ @misc{heins2022pymdp_arxiv
year={2022}
}

@misc{millidge2021understanding,
title={Understanding the origin of information-seeking exploration in probabilistic objectives for control},
author={Millidge, Beren and Tschantz, Alexander and Seth, Anil and Buckley, Christopher},
eprint={2103.06859v7},
archivePrefix={arXiv},
primaryClass={cs.LG},
year={2021}
}

@article{millidge2021whence,
title = {Whence the expected free energy?},
author = {Millidge, Beren and Tschantz, Alexander and Buckley, Christopher L.},
Expand Down Expand Up @@ -116,88 +84,6 @@ @article{parr2019neuronal
doi = {10.1038/s41598-018-38246-3}
}

@book{wainwright2008graphical,
title = {Graphical models, exponential families, and variational inference},
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year = {2008},
volume = {1},
publisher = {Now Publishers Inc},
doi = {10.1561/2200000001}
}

@book{beal2003variational,
title = {{Variational Algorithms for Approximate Bayesian Inference}},
author = {Beal, Matthew James},
year = {2003},
publisher = {University of London, University College London},
url = {https://cse.buffalo.edu/faculty/mbeal/thesis/}
}

@inproceedings{yedidia2000generalized,
title = {Generalized belief propagation},
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url = {https://dl.acm.org/doi/10.5555/3008751.3008848}
}

@article{winn2005variational,
title = {Variational message passing},
author = {Winn, John and Bishop, Christopher M.},
journal = {Journal of Machine Learning Research},
year = {2005},
volume = {6},
number = {23},
pages = {661--694},
url = {http://jmlr.org/papers/v6/winn05a.html}
}

@article{leptourgos2020circular,
title = {Circular inference in bistable perception},
author = {Leptourgos, Pantelis and Notredame, Charles-Edouard and Eck, Marion and Jardri, Renaud and Den{\`e}ve, Sophie},
journal = {Journal of Vision},
year = {2020},
volume = {20},
number = {4},
pages = {12},
doi = {10.1167/jov.20.4.12}
}

@article{jardri2017experimental,
title = {Experimental evidence for circular inference in schizophrenia},
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journal = {Nature Communications},
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}

@article{parr2020modules,
title = {Modules or mean-fields?},
author = {Parr, Thomas and Sajid, Noor and Friston, Karl J.},
journal = {Entropy},
year = {2020},
volume = {22},
number = {5},
pages = {552},
doi = {10.3390/e22050552}
}

@article{mackay1992bayesian,
title = {Bayesian interpolation},
author = {MacKay, David J.C.},
journal = {Neural Computation},
year = {1992},
volume = {4},
number = {3},
pages = {415--447},
doi = {10.1162/neco.1992.4.3.415}
}

@article{penny2004modelling,
title = {Modelling functional integration: A comparison of structural equation and dynamic causal models},
author = {Penny, Will D. and Stephan, Klaas E. and Mechelli, Andrea and Friston, Karl J.},
Expand All @@ -208,27 +94,6 @@ @article{penny2004modelling
doi = {10.1016/j.neuroimage.2004.07.041}
}

@article{blei2017variational,
title = {Variational inference: A review for statisticians},
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journal = {Journal of the American Statistical Association},
year = {2017},
volume = {112},
number = {518},
pages = {859--877},
doi = {10.1080/01621459.2017.1285773}
}

@article{markov2013cortical,
title = {Cortical high-density counterstream architectures},
author = {Markov, Nikola T. and Ercsey-Ravasz, M{\'a}ria and Van Essen, David C. and Knoblauch, Kenneth and Toroczkai, Zolt{\'a}n and Kennedy, Henry},
journal = {Science},
year = {2013},
volume = {342},
number = {6158},
doi = {10.1126/science.1238406}
}

@article{friston_active_2012,
title = {Active inference and agency: Optimal control without cost functions},
author = {Friston, Karl J. and Samothrakis, Spyridon and Montague, Read},
Expand Down Expand Up @@ -280,27 +145,6 @@ @inproceedings{tschantz2020scaling
doi = {10.1109/IJCNN48605.2020.9207382}
}

@article{mishkin1983object,
title = {Object vision and spatial vision: Two cortical pathways},
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journal = {Trends in Neurosciences},
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}

@article{zeki1991direct,
title = {A direct demonstration of functional specialization in human visual cortex},
author = {Zeki, Semir and Watson, J.D. and Lueck, C.J. and Friston, Karl J. and Kennard, C. and Frackowiak, R.S.},
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}

@article{friston2017process,
title = {Active inference: A process theory},
author = {Friston, Karl J. and FitzGerald, Thomas and Rigoli, Francesco and Schwartenbeck, Philipp and Pezzulo, Giovanni},
Expand Down Expand Up @@ -643,13 +487,6 @@ @article{parr2019generalised
doi = {10.1007/s00422-019-00805-w}
}

@misc{hipolito2021enactive,
title = {Enactive-Dynamic Social Cognition and Active Inference},
author = {Hip{\'o}lito, In{\^e}s and van Es, Thomas},
year = {2021},
url = {http://philsci-archive.pitt.edu/19653/}
}

@article{fox2021active,
title = {Active inference: Applicability to different types of social organization explained through reference to industrial engineering and quality management},
author = {Fox, Stephen},
Expand Down

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