Changelog
- Change chimera default method to "samplewise"
- Change parameters for swarm in default config file
- Use mamba as conda frontend in slurm profile
- Add script to calculate pairwise distances between ASVs in final output
- Add uchime algorithm as configurable to chimera filtering and require perfect
matches for uchime2_denovo and uchime3_denovo - Make sure ASV counts are treated as integers when preparing input
- Handle division by zero in calculating precision/recall
- Use pandas apply when calculating representative max count