Don't use obsolete ReplicaExchange0 class

integrativemodeling · Jun 16, 2023 · 1498b1c · 1498b1c
1 parent a6895ba
commit 1498b1c
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Showing 6 changed files with 6 additions and 6 deletions.
diff --git a/scripts/mmcif/archive_110dimer_1-220GCN4_nointra110xlinks.py b/scripts/mmcif/archive_110dimer_1-220GCN4_nointra110xlinks.py
@@ -245,7 +245,7 @@ def add_spc110_rep(mol,gtusc_pdbfile,gtusc_chain,gtusc_pdb_offset,unstructured_b
 dof.optimize_flexible_beads(100)
 
 # Run replica exchange Monte Carlo sampling
-mc1=IMP.pmi.macros.ReplicaExchange0(mdl,
+mc1=IMP.pmi.macros.ReplicaExchange(mdl,
                                     root_hier=root_hier,                          # pass the root hierarchy
                                     monte_carlo_temperature = 1.0,
                                     replica_exchange_minimum_temperature = 1.0,

diff --git a/scripts/mmcif/archive_110mono_1-220GCN4_nointra110xlinks.py b/scripts/mmcif/archive_110mono_1-220GCN4_nointra110xlinks.py
@@ -240,7 +240,7 @@ def add_spc110_rep(mol,gtusc_pdbfile,gtusc_chain,gtusc_pdb_offset,unstructured_b
 dof.optimize_flexible_beads(100)
 
 # Run replica exchange Monte Carlo sampling
-mc1=IMP.pmi.macros.ReplicaExchange0(mdl,
+mc1=IMP.pmi.macros.ReplicaExchange(mdl,
                                     root_hier=root_hier,                          # pass the root hierarchy
                                     monte_carlo_temperature = 1.0,
                                     replica_exchange_minimum_temperature = 1.0,

diff --git a/scripts/mmcif/archive_110tetramer_1-220GCN4_nointra110xlinks.py b/scripts/mmcif/archive_110tetramer_1-220GCN4_nointra110xlinks.py
@@ -244,7 +244,7 @@ def add_spc110_rep(mol,gtusc_pdbfile,gtusc_chain,gtusc_pdb_offset,unstructured_b
 dof.optimize_flexible_beads(100)
 
 # Run replica exchange Monte Carlo sampling
-mc1=IMP.pmi.macros.ReplicaExchange0(mdl,
+mc1=IMP.pmi.macros.ReplicaExchange(mdl,
                                     root_hier=root_hier,                          # pass the root hierarchy
                                     monte_carlo_temperature = 1.0,
                                     replica_exchange_minimum_temperature = 1.0,

diff --git a/scripts/sample/sample_gtusc_110dimer_1-220GCN4_nointra110xlinks.py b/scripts/sample/sample_gtusc_110dimer_1-220GCN4_nointra110xlinks.py
@@ -234,7 +234,7 @@ def add_spc110_rep(mol,gtusc_pdbfile,gtusc_chain,gtusc_pdb_offset,unstructured_b
 
 
 # Run replica exchange Monte Carlo sampling
-mc1=IMP.pmi.macros.ReplicaExchange0(mdl,
+mc1=IMP.pmi.macros.ReplicaExchange(mdl,
                                     root_hier=root_hier,                          # pass the root hierarchy
                                     monte_carlo_temperature = 1.0,
                                     replica_exchange_minimum_temperature = 1.0,

diff --git a/scripts/sample/sample_gtusc_110mono_1-220GCN4_nointra110xlinks.py b/scripts/sample/sample_gtusc_110mono_1-220GCN4_nointra110xlinks.py
@@ -227,7 +227,7 @@ def add_spc110_rep(mol,gtusc_pdbfile,gtusc_chain,gtusc_pdb_offset,unstructured_b
 dof.optimize_flexible_beads(100)
 
 # Run replica exchange Monte Carlo sampling
-mc1=IMP.pmi.macros.ReplicaExchange0(mdl,
+mc1=IMP.pmi.macros.ReplicaExchange(mdl,
                                     root_hier=root_hier,                          # pass the root hierarchy
                                     monte_carlo_temperature = 1.0,
                                     replica_exchange_minimum_temperature = 1.0,

diff --git a/scripts/sample/sample_gtusc_110tetramer_1-220GCN4_nointra110xlinks.py b/scripts/sample/sample_gtusc_110tetramer_1-220GCN4_nointra110xlinks.py
@@ -230,7 +230,7 @@ def add_spc110_rep(mol,gtusc_pdbfile,gtusc_chain,gtusc_pdb_offset,unstructured_b
 dof.optimize_flexible_beads(100)
 
 # Run replica exchange Monte Carlo sampling
-mc1=IMP.pmi.macros.ReplicaExchange0(mdl,
+mc1=IMP.pmi.macros.ReplicaExchange(mdl,
                                     root_hier=root_hier,                          # pass the root hierarchy
                                     monte_carlo_temperature = 1.0,
                                     replica_exchange_minimum_temperature = 1.0,