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ipb-halle · Sep 30, 2024 · b9ca1e5 · b9ca1e5
1 parent a6a0a08
commit b9ca1e5
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Showing 3 changed files with 6 additions and 3 deletions.
diff --git a/R/FragmentMatrixFunctions.R b/R/FragmentMatrixFunctions.R
@@ -1458,7 +1458,7 @@ convertToProjectFile <- function(filePeakMatrixPath,
   returnObj$numberOfSpectraDiscardedDueToNoPeaks <- numberOfSpectraDiscardedDueToNoPeaks
   returnObj$numberOfSpectraDiscardedDueToMaxIntensity <- numberOfSpectraDiscardedDueToMaxIntensity
   returnObj$numberOfSpectraDiscardedDueToTooHeavy <- numberOfSpectraDiscardedDueToTooHeavy
-
+  returnObj$qfeatures <- qfeatures
   return(returnObj)
 }
 
@@ -1855,7 +1855,8 @@ convertToProjectFile2 <- function(filePeakMatrixQF,
     numberOfUnmappedSpectra = numberOfUnmappedSpectra,
     numberOfUnmappedPrecursors = numberOfUnmappedPrecursors,
     numberOfUnmappedPrecursorsMz = numberOfUnmappedPrecursorsMz,
-    numberOfUnmappedPrecursorsRt = numberOfUnmappedPrecursorsRt
+    numberOfUnmappedPrecursorsRt = numberOfUnmappedPrecursorsRt,
+    qfeatures <- qfeatures
   )
 
   if(!is.na(progress))  if(progress)  setProgress(1) else print("Ready")

diff --git a/R/parsePeakAbundanceMatrixQF.R b/R/parsePeakAbundanceMatrixQF.R
@@ -161,6 +161,8 @@ parsePeakAbundanceMatrixQF <- function(qfeatures,
   returnObj$dataFrame <- dataFrame
   returnObj$vals <- vals
 
+  ## qfeatures
+  returnObj$qfeatures <- qfeatures
   ## meta
   returnObj$oldFormat <- oldFormat
   returnObj$numberOfPrecursors <- numberOfPrecursors

diff --git a/inst/MetFamily/app_files/server_guiTabInput.R b/inst/MetFamily/app_files/server_guiTabInput.R
@@ -391,7 +391,7 @@ importData <- function(importMS1andMS2data){
   error <- NULL
   withProgress(message = 'Processing matrix...', value = 0, {
     lines <- sparseMatrixToString(matrixRows = resultObj$matrixRows, matrixCols = resultObj$matrixCols, matrixVals = resultObj$matrixVals, parameterSet = parameterSet)
-
+    qfeatures <- resultObj$qfeatures
     #################################################
     ## process project file