V2 #157
Workflow file for this run
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| name: Test pling | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| pull_request: | |
| branches: | |
| - main | |
| - dev | |
| jobs: | |
| Testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest ] | |
| python-version: [ 3.9, "3.10", 3.11 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '1.5.8-0' | |
| environment-name: test-env | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - bioconda | |
| - defaults | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| sourmash | |
| pandas | |
| numpy | |
| intervaltree | |
| mummer=3.23 | |
| glpk=5.0 | |
| snakemake=7.32.4 | |
| plasnet=0.6.0 | |
| dingII | |
| init-shell: bash | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| - uses: eWaterCycle/setup-singularity@v7 | |
| with: | |
| singularity-version: 3.7.1 | |
| - name: Test | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate test-env | |
| python -m pip install . | |
| PYTHONPATH="." python -m unittest discover -s tests -t . |