Update requirements.txt and python version to be in line with sct-pip…

…eline/contrast-agnostic-softseg-spinalcord#60
ivadomed · Oct 9, 2023 · 688d1a0 · 688d1a0
1 parent 114ad2c
commit 688d1a0
Show file tree

Hide file tree

Showing 3 changed files with 10 additions and 10 deletions.
diff --git a/segment_sc_contrast-agnostic/README.md b/segment_sc_contrast-agnostic/README.md
@@ -3,9 +3,9 @@ Segment SC using contrast-agnostic MONAI model from PSIR contrast and perform ve
 1. Create a conda virtual environment and install dependencies
 
 ```console
-conda create -n monai python=3.8
+yes | conda create -n monai python=3.9
 conda activate monai
-pip install -r segment_sc_contrast-agnostic/requirements.txt
+yes | pip install -r segment_sc_contrast-agnostic/requirements.txt
 ```
 
 2. Segment SC using the contrast-agnostic MONAI model from PSIR contrast and perform vertebral labeling

diff --git a/segment_sc_contrast-agnostic/requirements.txt b/segment_sc_contrast-agnostic/requirements.txt
@@ -1,8 +1,8 @@
-dynamic_network_architectures
-joblib
-loguru
-monai[nibabel]
-scipy
-numpy
+dynamic_network_architectures==0.2
+joblib==1.3.0
+loguru==0.7.0
+monai[nibabel]==1.2.0
+scipy==1.11.2
+numpy==1.24.4
 --extra-index-url https://download.pytorch.org/whl/cpu
-torch
+torch==2.0.0
diff --git a/segment_sc_contrast-agnostic/segment_sc_contrast-agnostic.sh b/segment_sc_contrast-agnostic/segment_sc_contrast-agnostic.sh
@@ -6,7 +6,7 @@
 #     sct_run_batch -config config.json
 #
 # Note: conda environment with MONAI is required to run this script:
-#     conda create -n monai python=3.8
+#     conda create -n monai python=3.9
 #     conda activate monai
 #     pip install -r segment_sc_contrast-agnostic/requirements.txt
 #