Janek Grzegorzewski
and
Matthias König
The FluTypeDB project is a web application for the data management of binding assays for the classification of influenza subtypes.
FluTypeDB consists of a database and web interface with focus on various binding assays for the classification of influenza viruses and contains experimental data based on
- ELISA antibody binding assays
- Peptid binding assays on microwell plates
- Peptid bindings assays on peptide microarrays
FluTypeDB is developed for the data management and data analysis within the FluType project by Janek Grzegorzewski (Universität Potsdam) and Matthias König (Humboldt Universität Berlin).
The production version is available at http://www.flutype.de.
- Source Code: LGPLv3
- Documentation: CC BY-SA 4.0
- Data: Copyright and ownership FluType.
FluTypeDB is funded via the German FluType project.
v0.1.5 [2017-11-23]
- bug fixes and small improvements
v0.1.4 [2017-11-17]
In this release a multitude of bug fixes and improvements in the FluTypeDB interface have been implemented. In addition new features are available with this release
New features
- Gal file generator from database
- New table design
- Create/edit ligands (virus, peptides, antibodies), buffers and the respective batches
- Simplified user interface and improved forms with validation
- Admin interface & superuser administration via edit/delete
- Improved URL schema
- Better documentation
- Improved Database Backup
v0.1.3
- bug fixes and small improvements
- reusable macros
- improved UI
v0.1.2
- new grid system for layout
- more intuitive layout
- tutorial and about pages updated
- bug fixes
v0.1.0 [2017-10-15]
- updated web interface
- data models updated
In this section technical information for setup and testing with FluTypeDB is provided.
To test the webapp with the sqlite3 backend clone the repository and run the django development server in a virtual environment
git clone https://github.com/janekg89/flutype_webapp.git
mkvirtualenv flutype_webapp
(flutype_webapp) pip install -r requirements.txt
(flutype_webapp) python manage.py runserver
Necessary to create core database with
create_db.sh
To fill the database with test data run the following script. This applies all migrations and writes the database content.
(flutype_webapp) ./create_db.sh
Tests are run via
(flutype_webapp) python manage.py test
Running the unittests requires phantomjs which can be installed via the
following the instructions on
https://www.vultr.com/docs/how-to-install-phantomjs-on-ubuntu-16-04
sudo apt-get install build-essential chrpath libssl-dev libxft-dev libfreetype6-dev libfreetype6 libfontconfig1-dev libfontconfig1 -y
sudo wget https://bitbucket.org/ariya/phantomjs/downloads/phantomjs-2.1.1-linux-x86_64.tar.bz2
sudo tar xvjf phantomjs-2.1.1-linux-x86_64.tar.bz2 -C /usr/local/share/
sudo ln -s /usr/local/share/phantomjs-2.1.1-linux-x86_64/bin/phantomjs /usr/local/bin/
phantomjs --version
Coverage of Test are run via
coverage run --source='.' manage.py test
a report is displayed via:
coverage report
a html report is saved via:
coverage html
© 2017-2018 FluType