update ToC and publications

.github/workflows/deploy.yaml

@@ -8,9 +8,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - name: Checkout
-      uses: actions/checkout@v3
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v4
+      uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v5
       with:
         python-version: 3.9
     - name: Install dependencies
@@ -20,19 +20,19 @@ jobs:
       run: |
         jb build --all ./files/
     - name: GitHub Pages action
-      uses: peaceiris/actions-gh-pages@v3
+      uses: peaceiris/actions-gh-pages@v4
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: ./files/_build/html
 
   build-and-deploy-book-pdf:
-    needs: build-and-deploy-book
+    needs: build-and-deploy-book
     runs-on: ubuntu-latest
     steps:
     - name: Checkout
-      uses: actions/checkout@v3
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v4
+      uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v5
       with:
         python-version: 3.9
     - name: Install dependencies
@@ -56,7 +56,7 @@ jobs:
         mv ./files/_tochtml.yml ./files/_toc.yml
         mv ./files/_build/latex/python.pdf ./files/_build/latex/VideoHolography.pdf
     - name: GitHub Pages action
-      uses: peaceiris/actions-gh-pages@v3
+      uses: peaceiris/actions-gh-pages@v4
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
         publish_dir: ./files/_build/latex/

.gitignore

@@ -1,3 +1,15 @@
+.ipynb_checkpoints/
+*.log
+_build
+.DS_Store
+.jupyter_cache
+jupyter_execute
+src/_build/.jupyter_cache
+src/_build/jupyter_execute
+desktop.ini
+__pycache__
+**/*Zone.Identifier
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]
@@ -53,7 +65,6 @@ coverage.xml
 *.pot
 
 # Django stuff:
-*.log
 local_settings.py
 db.sqlite3
 db.sqlite3-journal
@@ -65,9 +76,6 @@ _build/
 # PyBuilder
 target/
 
-# Jupyter Notebook
-.ipynb_checkpoints
-
 # mkdocs documentation
 /site
 

files/Publications.md

@@ -134,7 +134,7 @@ Proc. E-MRS-fall, 20th to 23rd September 2021
 
 *  - ![foto](./images/phd.png)
    - Tsang-Hsuan Wang,
-**Study of Barium Titanate Epitaxy on Silicon toward Its Application in Video Holography**,
+**[Study of Barium Titanate Epitaxy on Silicon toward Its Application in Video Holography](thesisTsang.pdf)**,
 PhD Thesis, KULeuven, Leuven, Belgium, Monday, February 13, 2023.
 
 *  - ![foto](./images/phd.png)

files/_config.yml

@@ -1,6 +1,5 @@
 title: Video Holography
 author: Jan Genoe
-logo: images/logo.png
 description: Video Holography ERC project results summary
 only_build_toc_files: true
 repository:
@@ -24,6 +23,10 @@ bibtex_bibfiles:
   - VideoHolography.bib
 sphinx:
   config:
+    html_theme_options: 
+      logo:
+        image_light: images/logo.png
+        image_dark: images/logo_negatif.png
     html_show_copyright: false
     nb_remove_code_source: true
     latex_logo: images/logo.png