Creating a docker for the AnVIL User Poll #144
Workflow file for this run
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| # Candace Savonen March 2024 | |
| name: Pull Request | |
| on: | |
| pull_request: | |
| branches: [ main, staging ] | |
| jobs: | |
| dockerfiles-changed: | |
| name: Detect changed Dockerfiles | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get specific changed files | |
| id: base_ottr | |
| uses: tj-actions/[email protected] | |
| with: | |
| files: base_ottr/* | |
| - name: Get specific changed files | |
| id: ottrpal | |
| uses: tj-actions/[email protected] | |
| with: | |
| files: ottrpal/* | |
| - name: Get specific changed files | |
| id: bioconductor | |
| uses: tj-actions/[email protected] | |
| with: | |
| files: bioconductor/* | |
| - name: Get specific changed files | |
| id: python | |
| uses: tj-actions/[email protected] | |
| with: | |
| files: ottr_python/* | |
| - name: Get specific changed files | |
| id: quarto | |
| uses: tj-actions/[email protected] | |
| with: | |
| files: ottr_quarto/* | |
| - run: | | |
| echo ${{steps.base_ottr.outputs.any_changed}} | |
| echo ${{steps.ottrpal.outputs.any_changed}} | |
| echo ${{steps.bioconductor.outputs.any_changed}} | |
| echo ${{steps.python.outputs.any_changed}} | |
| echo ${{steps.quarto.outputs.any_changed}} | |
| outputs: | |
| base_ottr_changed: ${{steps.base_ottr.outputs.any_changed}} | |
| ottrpal_changed: ${{steps.ottrpal.outputs.any_changed}} | |
| bioconductor_changed: ${{steps.bioconductor.outputs.any_changed}} | |
| python_changed: ${{steps.python.outputs.any_changed}} | |
| quarto_changed: ${{steps.quarto.outputs.any_changed}} | |
| build-base: | |
| name: Build base ottr image | |
| needs: dockerfiles-changed | |
| if: ${{needs.dockerfiles-changed.outputs.base_ottr_changed == 'true'}} | |
| uses: ./.github/workflows/docker-test.yml | |
| with: | |
| directory: base_ottr | |
| tag: jhudsl/base_ottr | |
| secrets: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| build-ottrpal: | |
| name: Build ottrpal image | |
| needs: dockerfiles-changed | |
| if: ${{needs.dockerfiles-changed.outputs.ottrpal_changed == 'true'}} | |
| uses: ./.github/workflows/docker-test.yml | |
| with: | |
| directory: ottrpal | |
| tag: jhudsl/ottrpal | |
| secrets: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| build-bioconductor: | |
| name: Build bioconductor image | |
| needs: dockerfiles-changed | |
| if: ${{needs.dockerfiles-changed.outputs.bioconductor_changed == 'true'}} | |
| uses: ./.github/workflows/docker-test.yml | |
| with: | |
| directory: bioconductor | |
| tag: jhudsl/ottr_bioconductor | |
| secrets: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| build-python: | |
| name: Build python image | |
| needs: dockerfiles-changed | |
| if: ${{needs.dockerfiles-changed.outputs.python_changed == 'true'}} | |
| uses: ./.github/workflows/docker-test.yml | |
| with: | |
| directory: ottr_python | |
| tag: jhudsl/ottr_python | |
| secrets: | |
| GH_PAT: ${{ secrets.GH_PAT }} | |
| build-quarto: | |
| name: Build quarto ottr image | |
| needs: dockerfiles-changed | |
| if: ${{needs.dockerfiles-changed.outputs.quarto_changed == 'true'}} | |
| uses: ./.github/workflows/docker-test.yml | |
| with: | |
| directory: ottr_quarto | |
| tag: jhudsl/ottr_quarto | |
| secrets: | |
| GH_PAT: ${{ secrets.GH_PAT }} |