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Wishlist
Jordi Huguet edited this page Jan 3, 2018
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Find here posted processing ideas and requests for newly developed pipelines.
| Pipeline name | Description | Requester | Date added | Priority | Status |
|---|---|---|---|---|---|
| Deidentification of Structural Brain MRI | Automated scan defacer (graphical anonymizer). See here | J.Huguet | 15/11/2016 | LOW | Beta |
| DTI preprocessing | NSG DTIPreprocessing app. See here | M.Caan | 15/12/2016 | HIGH | Prod |
| MRS format conversion (SPAR/SDAT) | Converting Magnetic Resonance Spectroscopic data files (MRS) in DICOM to Philips .spar/.sdat format more suited for analysis tools (i.e. jMRUI,TARQUIN). See here | P.Buur | 12/01/2017 | LOW | Planned |
| fMRI preprocessing | Basic processing steps (coregistration, normalization, unwarping, noise component extraction, segmentation, skullstripping,...) for fMRI analysis preparation. See here | R.Govaarts | 19/01/2017 | MEDIUM | Planned |
| MRI bias field correction | pipeline based on Freesurfer's mri_nu_correct.mni (that wraps nu_correct, a tool from Non-parametric Non-uniformity Normalization suite (N3), Montreal Neurological Institute). See here | M.Caan | 24/03/2017 | MEDIUM | Prod |
| optiBET | optimized brain extraction protocol | D.Stoffers | 07/07/2017 | LOW | Planned |
| qMRI/multi-parametric mapping (T1/T2) | wiki entry | M.Caan | 10/07/2017 | MEDIUM | Beta |
| pydeface | defacing tool for nifti images | J.Huguet | 25/07/2017 | LOW | Planned |