repo for cell segmentation project
Step 1. Data preprocessing and save image patches and create training, testing and validation dataset: Data_pre.ipynb
Step 2. Unet segmentation and evaluation:
(a) Cell segmentation
Immune_cell_seg.ipynb
Organ_cell_seg.ipynb
(b) Nuclei segmentation
Immune_nuclei_seg.ipynb
Organ_nuclei_seg.ipynb
(c) Cyto segmentation
Immune_cyto_seg.ipynb
Organ_cyto_seg.ipynb