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38 Open 18 Closed
38 Open 18 Closed
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Issues list

splitGAlignmentsByCut returns empty .bam files
#64 opened Oct 25, 2024 by chklee30
12
how do I read my shifted bam ad an obj in splitGalignmentsByCut
#61 opened Oct 7, 2024 by sunta3iouxos
7
readBamFile with bigFile=TRUE still returns 0 GAlignmentsList
#60 opened Sep 27, 2024 by sunta3iouxos
2
estimated library size of NucleosomeFree.bam is unexpectedly small
#59 opened Jul 24, 2024 by cparsania
2
Optimizing Time and Memory Usage for Large BAM Files
#57 opened Oct 31, 2023 by FarzanehRah
6
Interpreting the outputs of the function TSSEscore() comparing to the reference from ENCODE
#54 opened Dec 22, 2022 by SergioRodLla
5
Read the shifted bam and continue the QC analysis
#52 opened Jul 22, 2022 by XiaoyuZhan520
7
Output bam files become smaller after shiftGAlignmentsList
#51 opened Jun 9, 2022 by Rui-Jing
4
different TSS.filter values affect the signals showing on the heatmap
#50 opened Mar 24, 2022 by hyjforesight
1
Strange TSS Enrichment Result
#47 opened Feb 24, 2022 by astarr97
1
Question about the read filtering by bamQC
#45 opened Jul 12, 2021 by etiennedanis
1
Question about bamQC
#44 opened Jul 12, 2021 by etiennedanis
1
splitBam fragment sizes for nucleosome-free DNA
#42 opened Apr 6, 2021 by rauldiul
2
splitGAlignmentsByCut Error in value[[3L]](cond) : 'mergeBam' 'destination' exists, 'overwrite' is FALSE destination: splitBam/NucleosomeFree.bam
#41 opened Mar 30, 2021 by rafet2005
8
Problem with shiftGAlignmentsList()
#40 opened Dec 7, 2020 by jingyu0602
2
How do I read a BAM file？
#39 opened Nov 3, 2020 by BeyondMyPast228
1
splitBam return a asBam error
#38 opened Nov 2, 2020 by jupollet
3
shiftGAlignmentsList() error
#37 opened Oct 29, 2020 by hirokomatsui
1
estimateLibComplexity error
#34 opened Oct 16, 2020 by noorisotoudeh
Pls help with the error... I am using hg38
#31 opened Sep 15, 2020 by hjack123
1
adjusting readBamFile output for plotCorrelation
#30 opened Sep 8, 2020 by tinavisnovska
4
factorFootprints error on system.file("extdata", "GL1.bam",package="ATACseqQC")
#29 opened Sep 7, 2020 by tinavisnovska
2
phastCons100way.UCSC.hg19 equivalent for mm10 ?
#28 opened Jul 10, 2020 by Just08
7
Remove interactive() in readBamFile.R
#27 opened Jun 30, 2020 by Puriney
Question about readBamFile function
#21 opened Jan 29, 2020 by El-Castor
20
ProTip! no:milestone will show everything without a milestone.