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  • Wellcome Trust Sanger Institute
  • Cambridge, UK

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Achievements

Achievement: Pair Extraordinairex2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3Achievement: Starstruck

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  • qpg Public

    Pangenome explorations

    C 3 Apache License 2.0 Updated Mar 4, 2025

  • pathfinder Public

    Forked from c-zhou/pathfinder
    C MIT License Updated Feb 26, 2025

  • samtools Public

    Forked from samtools/samtools

    Samtools with CRAM support (inherited from staden package io_lib).

    C 4 Other Updated Feb 13, 2025

  • hts-specs Public

    Forked from samtools/hts-specs

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX Updated Jan 29, 2025

  • www.htslib.org Public

    Forked from samtools/www.htslib.org

    The htslib.org web site

    HTML Updated Jan 28, 2025

  • htslib Public

    Forked from samtools/htslib

    C library for high-throughput sequencing data formats

    C 5 Other Updated Jan 27, 2025

  • htscodecs Public

    Forked from samtools/htscodecs

    Custom compression for CRAM and others.

    C 2 1 Other Updated Nov 14, 2024

  • bcftools Public

    Forked from samtools/bcftools

    This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

    C 1 Other Updated Oct 21, 2024

  • fqzcomp5 Public

    C 6 Updated Jun 26, 2024

  • quantum-explorers Public

    Forked from qiskit-community/quantum-explorers

    A self-paced, quantum computing learning journey for high school students and above.

    Jupyter Notebook Updated Sep 10, 2023

  • io_lib Public

    Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.

    C 36 15 Other Updated Apr 14, 2023

  • klib Public

    Forked from attractivechaos/klib

    A standalone and lightweight C library

    C Updated Mar 8, 2023

  • crumble Public

    Exploration of controlled loss of quality values for compressing CRAM files

    C 34 4 Other Updated Feb 23, 2023

  • qual_smooth Public

    C 2 MIT License Updated Nov 4, 2022

  • rans_static Public

    rANS coder (derived from https://github.com/rygorous/ryg_rans)

    C 83 5 Updated Mar 15, 2022

  • gdcc Public

    C 1 1 Updated Nov 16, 2021

  • cram31_bench Public

    Scripts for the CRAM 3.1 paper benchmarking

    Perl Updated Oct 11, 2021

  • ioccc_2002b Public

    A *failed* IOCCC entry for 2002

    C Updated Sep 16, 2021

  • tabix Public

    Forked from samtools/tabix

    Note: tabix and bgzip binaries are now part of the HTSlib project.

    C Updated Dec 8, 2020

  • htslib_benchmark Public

    Benchmarking of htslib and other tools

    Shell 3 MIT License Updated Jun 29, 2020

  • cram-js Public

    Forked from GMOD/cram-js

    Read CRAM v3 and v2 in node or in the browser

    JavaScript MIT License Updated Mar 31, 2020

  • htscodecs-corpus Public

    A larger set of test data for htscodecs

    Updated Jan 30, 2020

  • fqzcomp Public

    Fastq compression tool

    C 14 Updated Dec 2, 2019

  • cram_conformance Public

    Test files for validating a CRAM decoder

    Updated Nov 14, 2018

  • sam_realigner Public

    Realigns SAM/BAM/CRAM files to fix pairwise vs multiple alignment issues.

    C 1 1 Updated Jul 20, 2018

  • mpeg_misc Public

    Miscellaneous scripts and code for working on the MPEG genome-compression AHG

    C 1 Other Updated Jun 19, 2018

  • TurboBench Public

    Forked from powturbo/TurboBench

    TurboBench Compression Benchmark

    C Updated Aug 2, 2016

  • zlib Public

    Forked from madler/zlib

    A massively spiffy yet delicately unobtrusive compression library.

    C Updated May 18, 2016

  • io_trace Public

    Summarises strace output

    Perl 2 2 Updated Mar 8, 2016