Update python-app.yml #5
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Python application | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up miniconda | |
| run: | | |
| wget https://github.com/conda-forge/miniforge/releases/latest/download/Miniforge3-Linux-x86_64.sh | |
| bash Miniforge3-Linux-x86_64.sh -b | |
| ~/miniforge3/condabin/conda init | |
| source /home/runner/.bashrc | |
| conda config --add channels defaults | |
| conda config --add channels bioconda | |
| conda config --add channels conda-forge | |
| conda config --set channel_priority strict | |
| - name: install dependancies | |
| run: | | |
| /home/runner/miniforge3/bin/mamba install tb-profiler -y | |
| - name: Install dependencies | |
| run: | | |
| pip install --force-reinstall . | |
| - name: Run tests | |
| run: | | |
| cd tests | |
| pytest -x . | |