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update testing
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jodyphelan committed Apr 29, 2024
1 parent b8e8a34 commit 06cfc17
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion .github/workflows/testing.yml
Original file line number Diff line number Diff line change
Expand Up @@ -28,11 +28,14 @@ jobs:

- name: install dependancies
run: |
mamba create -n test tb-profiler -y
wget https://raw.githubusercontent.com/jodyphelan/TBProfiler/dev/conda/linux-latest.txt
conda create --name test --file linux-latest.txt
- name: Install dependencies
run: |
conda activate test
pip install --force-reinstall git+https://github.com/jodyphelan/pathogen-profiler.git@dev
pip install --force-reinstall .
- name: Run tests
run: |
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