bug

jodyphelan · Jul 4, 2024 · bc23fd9 · bc23fd9
1 parent 889f2aa
commit bc23fd9
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/tb-profiler b/tb-profiler
@@ -2,6 +2,7 @@
 import sys
 import pathogenprofiler as pp
 from pathogenprofiler import TempFilePrefix
+import pathogenprofiler.variant_calling as vc
 import argparse
 from rich_argparse import ArgumentDefaultsRichHelpFormatter
 import json
@@ -348,7 +349,7 @@ def int_2_or_more(arg):
 
 
 
-variant_callers = [cls.__software__ for cls in pp.variant_calling.VariantCaller.__subclasses__()]
+variant_callers = [cls.__software__ for cls in vc.VariantCaller.__subclasses__()]