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itol collate readme #364

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itol collate readme #364

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Expand Up @@ -166,6 +166,11 @@ Several files are produced by the `tb-profile collate` function. Among these are
* Drug resistance classes \(Sensitive, RR-TB, HR-TB, MDR-TB, Pre-XDR-TB, XDR\)
* Drug resistance calls for individual drugs, were filled circles represent resistance.

If you would like the ITOL config files to be generated add the `itol` argument to the `collate` function.
```bash
tb-profiler collate --itol
```

![](https://github.com/jodyphelan/jodyphelan.github.io/raw/master/img/itol_example.png)

## Citation
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