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Pull requests: joey711/phyloseq

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Pull requests list

plot_tree: Added ggplot code to fix ugly legend "a"s
#1748 opened Apr 29, 2024 by stephanbitterwolf Loading…
New feature: allow merge_taxa to keep recored of merged (and inextension tax_glom).
#1707 opened Oct 13, 2023 by derele Loading…
Fixed paste error in rarefy_even_dept & improved efficiency
#1630 opened Oct 23, 2022 by salix-d Loading…
1
fisher.alpha(x, se=TRUE) is defunct since Dec 2013: can cause error
#1582 opened Apr 17, 2022 by jarioksa Loading…
Fix issues with plot_tree function
#1445 opened Feb 26, 2021 by ycl6 Loading…
5
Fix minor message formatting
#1395 opened Sep 27, 2020 by erictleung Loading…
2
Make logo in README smaller for ease of seeing
#1340 opened Jun 4, 2020 by erictleung Loading…
fixed plot_phyloseq checking for wrong slots ...
#1330 opened May 13, 2020 by FelixErnst Loading…
Fix formatting and remove trailing spaces
#1289 opened Jan 1, 2020 by erictleung Loading…
2
Fix bug in transform_sample_counts()
#1263 opened Nov 8, 2019 by mikemc Loading…
1
import_qiime couldn't parse the otu table of "taxonomy" column name
#1253 opened Oct 23, 2019 by xiangpin Loading…
Fix typo in plot ordination documentation
#1246 opened Oct 12, 2019 by erictleung Loading…
1
Update phyloseq_to_metagenomeSeq function
#1216 opened Aug 23, 2019 by jordiestelle Loading…
1
Update almostAllAccessors.R
#1091 opened Mar 10, 2019 by cedwardson4 Loading…
add label_size parameter for plot_network function
#907 opened Mar 28, 2018 by CedricMidoux Loading…
merge_samples checks for single value before coercing to numeric
#893 opened Mar 5, 2018 by benjjneb Loading…
4
Fix species richness for non-integer data (e.g., OTU proportions)
#891 opened Mar 1, 2018 by vmikk Loading…
Add missing whitespace in rarefy_even_depth message
#875 opened Feb 1, 2018 by vmikk Loading…
Added a SILVA parseFunction. Feature
#854 opened Dec 4, 2017 by grabear Loading…
14
Added na.rm option to taxa_sums.
#733 opened Mar 25, 2017 by antagomir Loading…
ENH: add evenness metrics
#575 opened Jan 27, 2016 by colinbrislawn Loading…
1
7
Support for generalized UniFrac (again)
#528 opened Sep 19, 2015 by fangly Loading…
2
import_hitchip function added
#504 opened Jul 22, 2015 by antagomir Loading…
1
Fix for import_mothur cutoff and missing taxa
#412 opened Dec 5, 2014 by TT1972 Loading…
Preserve factor level order when creating sample_data
#406 opened Nov 25, 2014 by raivokolde Loading…
1
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