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25 Open 833 Closed
25 Open 833 Closed
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Issues list

Is it possible to run coassembly mode with 960 metagenomics samples?
#910 opened Nov 24, 2024 by weishwu
1
Step 10. Mapping Samples - excessive execution time?
#909 opened Nov 21, 2024 by MicroSeq
1
-extbins flag unsupported?
#908 opened Nov 19, 2024 by MicroSeq
5
How to use the sqm_mapper.pl outputs?
#907 opened Nov 18, 2024 by weishwu
How to use the --continue parameter in MegaHIT in squeezeMeta?
#906 opened Nov 18, 2024 by Yliub
sqm_mapper: reuse mapped reference genome possible?
#905 opened Nov 15, 2024 by dutchscientist
Stopping in STEP1 -> 01.run_all_assemblies.pl. Program finished abnormally
#904 opened Nov 7, 2024 by JackDettoLoco
4
Why is STEP4 taking longer to run after stricter QC and host read removal?
#901 opened Nov 4, 2024 by SamBrutySci
7
ModuleNotFoundError: No module named 'tqdm' development version
#900 opened Oct 31, 2024 by fconstancias
18
empty *_DASTool_bins directory
#899 opened Oct 31, 2024 by fconstancias
6
Question regarding DEseq2 for taxa
#898 opened Oct 31, 2024 by Tetrajf
2
Metadata connections SQMtools enhancement New feature or request
#849 opened Jun 7, 2024 by inej90
1
Workflow, tool version outline enhancement New feature or request
#825 opened Apr 11, 2024 by s-junguy
7
External database - CAZy Annotations missing. bug Something isn't working
#819 opened Mar 26, 2024 by da-shanmugapriya
7
"zip file is corrupt" when loading a zipped project into SQMtools bug Something isn't working SQMtools
#755 opened Nov 19, 2023 by fpusan
1
The "tax" parameter of the "subsetTax" function could accept list of taxons enhancement New feature or request SQMtools
#749 opened Nov 9, 2023 by glenjasper
3
Add the taxonomic category "Kingdom" for eukaryotes enhancement New feature or request Taxonomic annotation
#747 opened Nov 8, 2023 by glenjasper
4
Using dedupe.sh to identify and remove contigs contained in others (merged mode) Assembly enhancement New feature or request merged mode seqmerge mode
#701 opened Jun 26, 2023 by eperezv
2
sqm_longreads yields wrong mcount table bug Something isn't working sqm_longreads SQM_reads
#686 opened May 19, 2023 by jllavin77
10
option parser issue enhancement New feature or request
#609 opened Jan 18, 2023 by moritzbuck
1
sqm_reads.pl fails if -p is set to an absolute path instead of a relative one bug Something isn't working sqm_longreads SQM_reads
#586 opened Nov 22, 2022 by fpusan
04.rundiamond.pl error while using sqm_annot.pl
#558 opened Oct 10, 2022 by PuspenduSardar
8
Support for EggNOG version 5.0.2 databases enhancement New feature or request
#506 opened Jun 20, 2022 by mdehollander
2
sqm_reads2tables.py problem enhancement New feature or request
#477 opened May 4, 2022 by fpeti11
13
sqm2tables.py - All fixes in one place :-) SQMtools
#416 opened Jan 20, 2022 by biobrad
8
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