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How to use the --continue parameter in MegaHIT in squeezeMeta? #906

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Yliub opened this issue Nov 18, 2024 · 0 comments
Open

How to use the --continue parameter in MegaHIT in squeezeMeta? #906

Yliub opened this issue Nov 18, 2024 · 0 comments

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@Yliub
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Yliub commented Nov 18, 2024

Hi there,

Great tool for the metagenomic analysis. I am using the squeezeMeta to assembly 500 metagenomes. Due to the memery limit, I used the Seqmerge mode to assembly the read in each sample using megahit. but sometime, it would interrupt. so I was wondering how to use the --continue parameter in megahit by the command-line in squeezeMeta? thank you

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