exec: Your conda installation is not configured to use strict channel priorities. This is however crucial for having robust and correct environments (for details, see https://conda-forge.org/docs/user/tipsandtricks.html). Please consider to configure strict priorities by executing 'conda config --set channel_priority strict'. Fetching Overleaf repo... Pulling changes from Overleaf: src/tex/ms.tex src/tex/bib.bib Preprocess: Setting up... Preprocess: Generating XML tree... warning: ms.tex:55: Overfull /hbox (10.882pt too wide) in paragraph at lines 55--55 warning: ms.tex:141: Underfull /hbox (badness 1577) in paragraph at lines 139--141 warning: ms.tex:141: Underfull /hbox (badness 4765) in paragraph at lines 139--141 warning: ms.tex:141: Underfull /hbox (badness 1558) in paragraph at lines 139--141 warning: ms.tex:147: Underfull /hbox (badness 10000) in paragraph at lines 146--147 warning: warnings were issued by the TeX engine; use --print and/or --keep-logs for details. Preprocess: Setting up the workflow... Traceback (most recent call last): File "/home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpb4vymgsz.preprocess.py", line 484, in <module> config["tree"] = get_json_tree(snakemake.input[0]) File "/home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpb4vymgsz.preprocess.py", line 409, in get_json_tree free_floating_graphics = [ File "/home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpb4vymgsz.preprocess.py", line 412, in <listcomp> if graphic not in config["tex_files_out"] KeyError: 'tex_files_out' Error in rule syw__preprocess: jobid: 1 output: .showyourwork/config.json RuleException: CalledProcessErrorin line 98 of /opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/showyourwork/workflow/rules/preprocess.smk: Command 'set -euo pipefail; /opt/hostedtoolcache/Python/3.10.14/x64/bin/python /home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/scripts/tmpb4vymgsz.preprocess.py' returned non-zero exit status 1. File "/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/site-packages/showyourwork/workflow/rules/preprocess.smk", line 98, in __rule_4 File "/opt/hostedtoolcache/Python/3.10.14/x64/lib/python3.10/concurrent/futures/thread.py", line 58, in run Exiting because a job execution failed. Look above for error message

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-python@v4, showyourwork/showyourwork-action@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: showyourwork/showyourwork-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/