small plotting update #50
Annotations
1 error and 3 warnings
exec: Fetching Overleaf repo...
Pulling changes from Overleaf: src/tex/ms.tex src/tex/bib.bib
Preprocess: Setting up...
Preprocess: Generating XML tree...
warning: ms.tex:56: Overfull /hbox (10.882pt too wide) in paragraph at lines 56--56
warning: ms.tex:65: Overfull /hbox (10.882pt too wide) in paragraph at lines 65--65
warning: ms.tex:142: Underfull /hbox (badness 5231) in paragraph at lines 141--142
warning: ms.tex:142: Underfull /hbox (badness 3158) in paragraph at lines 141--142
warning: ms.tex:142: Underfull /hbox (badness 4328) in paragraph at lines 141--142
warning: warnings were issued by the TeX engine; use --print and/or --keep-logs for details.
Preprocess: Setting up the workflow...
User is not authenticated to edit 10.5281/zenodo.12695937.
User is not authenticated to edit 10.5072/zenodo.80336.
Building the workflow graph...
Running user rule sim_figure3...
Searching remote file cache: src/data/Figure3...
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
5 823k 5 44246 0 0 49826 0 0:00:16 --:--:-- 0:00:16 49826
100 823k 100 823k 0 0 582k 0 0:00:01 0:00:01 --:--:-- 582k
Restoring from Zenodo cache: src/data/Figure3...
Generating figure output: src/tex/figures/temperature_train_L40_H0.01_t20.png src/tex/figures/abundance_train_L40_H0.01_t20.png src/tex/figures/temperature_train_L80_H0.01_t20.png src/tex/figures/abundance_train_L80_H0.01_t20.png...
Traceback (most recent call last):
File "/home/runner/work/ebtel_abundances/ebtel_abundances/src/scripts/render_figure3.py", line 7, in <module>
from plot import plot_figures
File "/home/runner/work/ebtel_abundances/ebtel_abundances/src/scripts/plot.py", line 51
if show_legend':
^
SyntaxError: unterminated string literal (detected at line 51)
Error in rule syw__fig3:
jobid: 8
output: src/tex/figures/temperature_train_L40_H0.01_t20.png, src/tex/figures/abundance_train_L40_H0.01_t20.png, src/tex/figures/temperature_train_L80_H0.01_t20.png, src/tex/figures/abundance_train_L80_H0.01_t20.png
conda-env: /home/runner/work/ebtel_abundances/ebtel_abundances/.snakemake/conda/41ab1c3c3ca4d02892b17d9239e71f4b_
shell:
python src/scripts/render_figure3.py
(one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
Exiting because a job execution failed. Look above for error message
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "showyourwork-logs".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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The following actions uses node12 which is deprecated and will be forced to run on node16: showyourwork/showyourwork-action@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, actions/setup-python@v4, showyourwork/showyourwork-action@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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