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@SBU-BMI @niflows @neuronets

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  1. HIPPO HIPPO Public

    HIPPO 🦛 is an explainable AI toolkit for weakly-supervised models in computational pathology. It enables hypothesis testing on tissue and searching for high-effect and low-effect tissue regions.

    Python 10 1

  2. SBU-BMI/wsinfer SBU-BMI/wsinfer Public

    🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    Python 60 11

  3. ReproNim/neurodocker ReproNim/neurodocker Public

    Generate custom Docker and Singularity images, and minimize existing containers

    Python 330 97

  4. neuronets/nobrainer neuronets/nobrainer Public

    A framework for developing neural network models for 3D image processing.

    Python 159 45