v1.0.7.zenodo #16
Workflow file for this run
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| name: Publish DataSAIL | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| publish: | |
| strategy: | |
| matrix: | |
| python-version: | |
| - '3.8' | |
| - '3.9' | |
| - '3.10' | |
| - '3.11' | |
| - '3.12' | |
| datasail-versions: | |
| - 'full' | |
| - 'lite' | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Mamba | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: MPP | |
| use-mamba: true | |
| - name: Install environment | |
| shell: bash -l {0} | |
| run: | | |
| conda install -y anaconda-client conda-build git | |
| - name: Build DataSAIL for linux-64 | |
| if: matrix.datasail-versions == 'full' | |
| shell: bash -l {0} | |
| run: | | |
| conda-build -q -c conda-forge -c bioconda --output-folder . --no-test --append-file base_recipe.yaml recipe | |
| - name: Convert DataSAIL to osx-64 | |
| if: matrix.datasail-versions == 'full' | |
| shell: bash -l {0} | |
| run: | | |
| conda convert -p osx-64 linux-64/*.tar.bz2 | |
| - name: Publish DataSAIL to Conda | |
| if: matrix.datasail-versions == 'full' | |
| env: | |
| ANACONDA_TOKEN: ${{ secrets.DATASAIL_ANACONDA_TOKEN }} | |
| shell: bash -l {0} | |
| run: | | |
| anaconda -t "$ANACONDA_TOKEN" upload linux-64/*.tar.bz2 | |
| anaconda -t "$ANACONDA_TOKEN" upload osx-64/*.tar.bz2 | |
| - name: Build DataSAIL for linux-64 | |
| if: matrix.datasail-versions == 'lite' | |
| shell: bash -l {0} | |
| run: | | |
| conda-build -q -c conda-forge -c bioconda --output-folder . --no-test --append-file base_recipe.yaml recipe_lite | |
| - name: Convert DataSAIL to osx-64, osx-arm64, win-64 | |
| if: matrix.datasail-versions == 'lite' | |
| shell: bash -l {0} | |
| run: | | |
| conda convert -p osx-64 linux-64/*.tar.bz2 | |
| conda convert -p osx-arm64 linux-64/*.tar.bz2 | |
| conda convert -p win-64 linux-64/*.tar.bz2 | |
| - name: Publish DataSAIL-lite to Conda | |
| if: matrix.datasail-versions == 'lite' | |
| env: | |
| ANACONDA_TOKEN: ${{ secrets.DATASAIL_ANACONDA_TOKEN }} | |
| shell: bash -l {0} | |
| run: | | |
| anaconda -t "$ANACONDA_TOKEN" upload linux-64/*.tar.bz2 | |
| anaconda -t "$ANACONDA_TOKEN" upload osx-64/*.tar.bz2 | |
| anaconda -t "$ANACONDA_TOKEN" upload osx-arm64/*.tar.bz2 | |
| anaconda -t "$ANACONDA_TOKEN" upload win-64/*.tar.bz2 |