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Fixes in experiment visualization #29

Fixes in experiment visualization

Fixes in experiment visualization #29

Workflow file for this run

# This is a basic workflow to help you get started with Actions
name: Testing All Python Versions
# Controls when the workflow will run
on:
# Triggers the workflow on push or pull request events but only for the main branch
push:
branches:
- main
- dev
pull_request:
branches:
- main
workflow_dispatch: # make is manually start-able
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# This workflow contains a single job called "test"
test:
strategy:
matrix:
python-version:
- '3.8'
- '3.9'
- '3.11'
- '3.12'
runs-on: 'ubuntu-latest'
steps:
- uses: actions/checkout@v4
- name: Setup Mamba
uses: conda-incubator/setup-miniconda@v3
with:
python-version: ${{ matrix.python-version }}
miniforge-variant: Mambaforge
miniforge-version: latest
activate-environment: MPP
use-mamba: true
- name: Install environment
shell: bash -l {0}
run: |
mamba install -c conda-forge -c bioconda -y numpy pandas networkx matplotlib pytest setuptools pyscipopt foldseek mmseqs2 cd-hit mash tmalign diamond cvxpy pytest-cov rdkit">=2023.09.1" pytest-cases scikit-learn pyyaml h5py
pip install grakel
- name: Run tests
shell: bash -l {0}
run: |
cd tests
pytest -m "not todo and not issue"