Publish DataSAIL #4
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Publish DataSAIL | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| publish: | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Mamba | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: '3.10' | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: MPP | |
| use-mamba: true | |
| - name: Install environment | |
| shell: bash -l {0} | |
| run: | | |
| conda install -y anaconda-client conda-build git | |
| - name: Build DataSAIL for linux-64 | |
| shell: bash -l {0} | |
| run: | | |
| conda-build -q --variants "{python: [3.8, 3.9, 3.10, 3.11, 3.12]}" -c conda-forge -c bioconda --output-folder . --no-test recipe | |
| - name: Convert DataSAIL to osx-64 | |
| shell: bash -l {0} | |
| run: | | |
| conda convert -p osx-64 linux-64/*.tar.bz2 | |
| - name: Publish DataSAIL to Conda | |
| env: | |
| ANACONDA_TOKEN: ${{ secrets.DATASAIL_ANACONDA_TOKEN }} | |
| shell: bash -l {0} | |
| run: | | |
| anaconda -t "$ANACONDA_TOKEN" upload linux-64/*.tar.bz2 | |
| anaconda -t "$ANACONDA_TOKEN" upload osx-64/*.tar.bz2 |