Merge remote-tracking branch 'origin/dev' into dev #4

	# This is a basic workflow to help you get started with Actions

	name: Testing All Python Versions

	# Controls when the workflow will run
	on:
	# Triggers the workflow on push or pull request events but only for the main branch
	push:
	branches:
	- main
	- dev
	pull_request:
	branches:
	- main
	workflow_dispatch: # make is manually start-able

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	# This workflow contains a single job called "test"
	test:
	strategy:
	matrix:
	python-version:
	- '3.8'
	- '3.9'
	- '3.11'
	- '3.12'
	runs-on: 'ubuntu-latest'
	steps:
	- uses: actions/checkout@v4

	- name: Setup Mamba
	uses: conda-incubator/setup-miniconda@v3
	with:
	python-version: ${{ matrix.python-version }}
	miniforge-variant: Mambaforge
	miniforge-version: latest
	activate-environment: MPP
	use-mamba: true

	- name: Install environment
	shell: bash -l {0}
	run: \|
	mamba install -c conda-forge -c bioconda -y numpy pandas networkx matplotlib pytest setuptools pyscipopt foldseek mmseqs2 cd-hit mash tmalign diamond cvxpy pytest-cov rdkit">=2023.09.1" pytest-cases scikit-learn pyyaml h5py
	pip install grakel

	- name: Run tests
	shell: bash -l {0}
	run: \|
	cd tests
	pytest -m "not todo and not issue"

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