Fix and extend CI testing #173
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| Testing: | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: true | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest ] | |
| python-version: [ 3.9, 3.10 ] | |
| snakemake-version: [ 6, 7 ] | |
| include: | |
| - python-version: 3.8 | |
| snakemake-version: 7 | |
| - python-version: 3.9 | |
| snakemake-version: 7 | |
| - python-version: 3.10 | |
| snakemake-version: 7 | |
| - python-version: 3.11 | |
| snakemake-version: 7 | |
| - python-version: 3.11 | |
| snakemake-version: 8 | |
| - python-version: 3.11 | |
| snakemake-version: 8.0 | |
| - python-version: 3.11 | |
| snakemake-version: 8.1 | |
| - python-version: 3.11 | |
| snakemake-version: 8.2 | |
| - python-version: 3.11 | |
| snakemake-version: 8.3 | |
| - python-version: 3.11 | |
| snakemake-version: 8.4 | |
| - python-version: 3.11 | |
| snakemake-version: 8.5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: 1.5.6-0 | |
| environment-name: test-env | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - bioconda | |
| - defaults | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| snakemake-minimal=${{ matrix.snakemake-version }} | |
| mamba | |
| make | |
| init-shell: bash | |
| cache-environment: true | |
| post-cleanup: all | |
| - name: Versions | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate test-env | |
| python -v | |
| snakemake -v | |
| - name: Make bigtest | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate test-env | |
| make bigtest |