add busco tool #2635
Workflow file for this run
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| name: KBase Collections tests | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - ready_for_review | |
| push: | |
| # run workflow when merging to main or develop | |
| branches: | |
| - main | |
| - master | |
| - develop | |
| jobs: | |
| collections_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] | |
| steps: | |
| - name: Repo checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependecies | |
| # tried VaultVulp/action-pipenv but pytest wasn't on the path post action | |
| shell: bash | |
| run: | | |
| pip install pipenv | |
| pipenv sync --system --dev | |
| - name: Run tests | |
| shell: bash | |
| run: PYTHONPATH=. pytest --cov=src --cov-report=xml test | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true |