Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

RE2022-195 - add retrieve samples logic #327

Merged
merged 18 commits into from
Jun 16, 2023
Merged

RE2022-195 - add retrieve samples logic #327

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
18 commits
Select commit Hold shift + click to select a range
cd498db
add retreive samples logic
Tianhao-Gu Jun 12, 2023
9bf7534
remove local testing logic
Tianhao-Gu Jun 12, 2023
12c40ed
Merge branch 'main' into dev_retrieve_samples
Tianhao-Gu Jun 12, 2023
d643411
address comments
Tianhao-Gu Jun 12, 2023
674858d
using sample service client
Tianhao-Gu Jun 13, 2023
f495387
add retrieve node tree logic
Tianhao-Gu Jun 13, 2023
06fab4c
move file extension to common names for parser
Tianhao-Gu Jun 13, 2023
26b7330
process long and lat data
Tianhao-Gu Jun 14, 2023
48d7b17
retrieve samples from genome instead of assembly
Tianhao-Gu Jun 14, 2023
114e925
fix genome_upa format
Tianhao-Gu Jun 14, 2023
611f54f
address comments
Tianhao-Gu Jun 15, 2023
4b825de
fix file prefix
Tianhao-Gu Jun 15, 2023
0a6490f
make sure metadata file gets updated
Tianhao-Gu Jun 15, 2023
d9c8ea7
add sample retrieve time
Tianhao-Gu Jun 15, 2023
f68b82e
time
Tianhao-Gu Jun 15, 2023
3df23f6
time
Tianhao-Gu Jun 15, 2023
67e2e8d
check metadata file first
Tianhao-Gu Jun 15, 2023
f07f3ee
add more comments
Tianhao-Gu Jun 15, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Loading