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add bbmap tool #748

Merged
merged 12 commits into from
Aug 21, 2024
Merged

add bbmap tool #748

merged 12 commits into from
Aug 21, 2024

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Tianhao-Gu
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MrCreosote and others added 2 commits March 26, 2024 14:37
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codecov bot commented Aug 17, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 46.08%. Comparing base (4c4a7f9) to head (8e91382).
Report is 13 commits behind head on develop.

Additional details and impacted files
@@           Coverage Diff            @@
##           develop     #748   +/-   ##
========================================
  Coverage    46.08%   46.08%           
========================================
  Files           78       78           
  Lines         7059     7059           
========================================
  Hits          3253     3253           
  Misses        3806     3806           

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@@ -41,7 +41,7 @@

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@Tianhao-Gu Tianhao-Gu Aug 17, 2024

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BBMap tool operates very quickly, processing each genome under a second. Using the default configuration for task scheduling is sufficient.

RELEASE_NOTES.md Show resolved Hide resolved
src/loaders/compute_tools/bbmap/bbmap.py Show resolved Hide resolved
src/loaders/compute_tools/bbmap/bbmap.py Show resolved Hide resolved
@Tianhao-Gu Tianhao-Gu merged commit 758e036 into develop Aug 21, 2024
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@Tianhao-Gu Tianhao-Gu deleted the dev_add_bbmap_tool branch August 21, 2024 22:23
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2 participants