🔧 Update arranger config and add exit condition in compareStudiesDupe…

…sIfExist script (#228)
kids-first · Jan 6, 2025 · f243355 · f243355
1 parent 299650b
commit f243355
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Showing 2 changed files with 31 additions and 10 deletions.
diff --git a/admin/arrangerProjectConf.json b/admin/arrangerProjectConf.json
@@ -47,6 +47,13 @@
         "isArray": true
       }
     },
+    {
+      "field": "dataset_names",
+      "graphqlField": "file",
+      "extendedFieldMappingInput": {
+        "isArray": true
+      }
+    },
     {
       "field": "files",
       "graphqlField": "file",
@@ -204,42 +211,49 @@
       }
     },
     {
-      "field": "dataset",
+      "field": "datasets",
+      "graphqlField": "study",
+      "extendedFieldMappingInput": {
+        "isArray": true
+      }
+    },
+    {
+      "field": "datasets.access_limitations",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
       }
     },
     {
-      "field": "dataset.access_limitations",
+      "field": "datasets.access_requirements",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
       }
     },
     {
-      "field": "dataset.access_requirements",
+      "field": "datasets.data_categories",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
       }
     },
     {
-      "field": "dataset.data_types",
+      "field": "datasets.data_types",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
       }
     },
     {
-      "field": "dataset.expected_data_categories",
+      "field": "datasets.expected_data_categories",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
       }
     },
     {
-      "field": "dataset.publications",
+      "field": "datasets.publications",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
@@ -295,14 +309,14 @@
       }
     },
     {
-      "field": "publications_details",
+      "field": "publications",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
       }
     },
     {
-      "field": "publications_details.authors",
+      "field": "publications_details",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
@@ -316,14 +330,14 @@
       }
     },
     {
-      "field": "publications_details.issued_date_parts",
+      "field": "publications_details.authors",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true
       }
     },
     {
-      "field": "publications",
+      "field": "publications_details.issued_date_parts",
       "graphqlField": "study",
       "extendedFieldMappingInput": {
         "isArray": true

diff --git a/admin/compareStudiesDupesIfExist.mjs b/admin/compareStudiesDupesIfExist.mjs
@@ -38,6 +38,13 @@ const dupes = all
         };
     }, {});
 
+if (Object.keys(dupes).length === 0) {
+    console.log(`No duplicates found`);
+    process.exit(0);
+}
+
+console.log('Duplicated Studies: ', Object.keys(dupes).join(', '));
+
 const numberComparisons = Object.entries(dupes).reduce((xs, x) => {
     const n = x[1].length;
     return xs + binomialCoefficient(n, 2);