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✨Add Chung constants to kflib #659

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✨Add Chung constants to kflib #659

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ae27a0c
:construction: Add SAMPLE_PROCUREMENT.SALIVA_KIT constant for Letra
r3m0chop Mar 9, 2023
9ede6d2
:construction: Add ANATOMY_SITE.{ARM|MOUTH} constants for Letra
r3m0chop Mar 9, 2023
7cefec8
:construction: Add RELATIONSHIP constants for Letra extended multiple…
r3m0chop Mar 9, 2023
e5cffb0
:construction: Add RELATIONSHIP constants for Chung extended families
r3m0chop Mar 9, 2023
2c5f801
:construction: Add COMPOSITION.AMNIOCYTE constant for Chung
r3m0chop Mar 9, 2023
c4604a7
:construction: Add ANATOMY_SITE.{ABDOMINAL_SKIN|DIAPHRAGM|FIBROBLASTS…
r3m0chop Mar 9, 2023
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81 changes: 78 additions & 3 deletions kf_lib_data_ingest/common/constants.py
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Original file line number Diff line number Diff line change
Expand Up @@ -39,6 +39,7 @@ class HASH:

class SPECIMEN:
class COMPOSITION:
AMNIOCYTE = "Amniocyte"
BLOOD = "Peripheral Whole Blood"
BONE = "Bone"
BONE_MARROW = "Bone Marrow"
Expand All @@ -57,13 +58,20 @@ class SAMPLE_PROCUREMENT:
AUTOPSY = "Autopsy"
BIOPSY = "Biopsy"
BLOOD_DRAW = "Blood Draw"
SALIVA_KIT = "Saliva Kit"
SUBTOTAL_RESECTION = "Subtotal Resection"
TOTAL_RESECTION = "Gross Total Resection"
BONE_MARROW_ASPIRATION = "Bone Marrow Aspiration"

class ANATOMY_SITE:
ABDOMINAL_SKIN = "Abdominal Skin"
ARM = "Arm"
BONE_MARROW = "Bone Marrow"
DIAPHRAGM = "Diaphragm"
FIBROBLASTS = "Fibroblasts"
HAIR = "Hair"
MOUTH = "Mouth"
SKELETAL_MUSCLE = "Skeletal Muscle"
SKULL = "Skull"
CNS = "Central Nervous System"

Expand Down Expand Up @@ -388,21 +396,29 @@ class VITAL_STATUS:

class RELATIONSHIP:
PROBAND = "Proband"
# PARTNERS:
HUSBAND = "Husband"
WIFE = "Wife"
SPOUSE = "Spouse"
# PARENTS:
MOTHER = "Mother"
FATHER = "Father"
PARENT = "Parent"
# CHILDREN:
DAUGHTER = "Daughter"
SON = "Son"
CHILD = "Child"
# SIBLINGS:
BROTHER = "Brother"
SISTER = "Sister"
TWIN_BROTHER = "Twin Brother"
TWIN_SISTER = "Twin Sister"
TWIN = "Twin"
HALF_BROTHER = "Half-Brother"
HALF_SISTER = "Half-Sister"
HALF_SIBLING = "Half-Sibling"
SIBLING = "Sibling"
DAUGHTER = "Daughter"
SON = "Son"
CHILD = "Child"
# GRANDPARENTS:
MATERNAL_GRANDMOTHER = "Maternal Grandmother"
MATERNAL_GRANDFATHER = "Maternal Grandfather"
MATERNAL_GRANDPARENT = "Maternal Grandparent"
Expand All @@ -412,6 +428,7 @@ class RELATIONSHIP:
GRANDMOTHER = "Grandmother"
GRANDFATHER = "Grandfather"
GRANDPARENT = "Grandparent"
# GRANDCHILDREN:
MATERNAL_GRANDDAUGHTER = "Maternal Granddaughter"
MATERNAL_GRANDSON = "Maternal Grandson"
MATERNAL_GRANDCHILD = "Maternal Grandchild"
Expand All @@ -421,6 +438,64 @@ class RELATIONSHIP:
GRANDDAUGHTER = "Granddaughter"
GRANDSON = "Grandson"
GRANDCHILD = "Grandchild"
# GREAT GRANDPARENTS:
MATERNAL_GREAT_GRANDMOTHER = "Maternal Great-Grandmother"
MATERNAL_GREAT_GRANDFATHER = "Maternal Great-Grandfather"
MATERNAL_GREAT_GRANDPARENT = "Maternal Great-Grandparent"
PATERNAL_GREAT_GRANDMOTHER = "Paternal Great-Grandmother"
PATERNAL_GREAT_GRANDFATHER = "Paternal Great-Grandfather"
PATERNAL_GREAT_GRANDPARENT = "Paternal Great-Grandparent"
GREAT_GRANDMOTHER = "Great-Grandmother"
GREAT_GRANDFATHER = "Great-Grandfather"
GREAT_GRANDPARENT = "Great-Grandparent"
# GREAT GRANDCHILDREN:
MATERNAL_GREAT_GRANDDAUGHTER = "Maternal Great-Granddaughter"
MATERNAL_GREAT_GRANDSON = "Maternal Great-Grandson"
MATERNAL_GREAT_GRANDCHILD = "Maternal Great-Grandchild"
PATERNAL_GREAT_GRANDDAUGHTER = "Paternal Great-Granddaughter"
PATERNAL_GREAT_GRANDSON = "Paternal Great-Grandson"
PATERNAL_GREAT_GRANDCHILD = "Paternal Great-Grandchild"
GREAT_GRANDDAUGHTER = "Great-Granddaughter"
GREAT_GRANDSON = "Great-Grandson"
GREAT_GRANDCHILD = "Great-Grandchild"
# AUNTS/UNCLES:
MATERNAL_AUNT = "Maternal Aunt"
MATERNAL_UNCLE = "Maternal Uncle"
PATERNAL_AUNT = "Paternal Aunt"
PATERNAL_UNCLE = "Paternal Uncle"
AUNT = "Aunt"
UNCLE = "Uncle"
# GREAT AUNTS/UNCLES:
MATERNAL_GREAT_AUNT = "Maternal Great Aunt"
MATERNAL_GREAT_UNCLE = "Maternal Great Uncle"
PATERNAL_GREAT_AUNT = "Paternal Great Aunt"
PATERNAL_GREAT_UNCLE = "Paternal Great Uncle"
GREAT_AUNT = "Great Aunt"
GREAT_UNCLE = "Great Uncle"
# NEPHEWS/NIECES:
MATERNAL_NEPHEW = "Maternal Nephew"
MATERNAL_NIECE = "Maternal Niece"
PATERNAL_NEPHEW = "Paternal Nephew"
PATERNAL_NIECE = "Paternal Niece"
NEPHEW = "Nephew"
NIECE = "Niece"
# GREAT NEPHEWS/NIECES:
MATERNAL_GREAT_NEPHEW = "Maternal Great Nephew"
MATERNAL_GREAT_NIECE = "Maternal Great Niece"
PATERNAL_GREAT_NEPHEW = "Paternal Great Nephew"
PATERNAL_GREAT_NIECE = "Paternal Great Niece"
GREAT_NEPHEW = "Great Nephew"
GREAT_NIECE = "Great Niece"
# COUSINS:
MATERNAL_FIRST_COUSIN = "Maternal First Cousin"
PATERNAL_FIRST_COUSIN = "Paternal First Cousin"
FIRST_COUSIN = "First Cousin"
MATERNAL_SECOND_COUSIN = "Maternal Second Cousin"
PATERNAL_SECOND_COUSIN = "Paternal Second Cousin"
SECOND_COUSIN = "Second Cousin"
MATERNAL_COUSIN = "Maternal Cousin"
PATERNAL_COUSIN = "Paternal Cousin"
COUSIN = "Cousin"


R = RELATIONSHIP
Expand Down