fix bugs in two-species simulation and filtering #162
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [master] | |
| paths: | |
| - DESCRIPTION | |
| - NAMESPACE | |
| - R/** | |
| - src/** | |
| - tests/** | |
| - man/** | |
| - data/** | |
| pull_request: | |
| branches: [master] | |
| paths: | |
| - DESCRIPTION | |
| - NAMESPACE | |
| - R/** | |
| - src/** | |
| - tests/** | |
| - man/** | |
| - data/** | |
| workflow_dispatch: | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::covr | |
| any::tidyr | |
| any::ggplot2 | |
| any::dplyr | |
| any::knitr | |
| any::subplex | |
| any::nloptr | |
| any::ggtree | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |