#65 Reorganize files, consistent CMake variables

CMakeLists.txt

@@ -1,13 +1,39 @@
 cmake_minimum_required(VERSION 3.17)
 project(kokkos-resilience VERSION 0.1.0)
 
+include(CMakeDependentOption)
+
 INCLUDE(GNUInstallDirs)
 
 set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake/Modules")
 
 add_library(resilience)
 add_library(Kokkos::resilience ALIAS resilience)
 
+#Expose a variable to linking CMakeLists and as a compile definition.
+set(KR_EXPOSED_OPTIONS "")
+macro(KR_EXPOSE_OPTION OPT)
+  list(APPEND KR_EXPOSED_OPTIONS "${OPT}")
+
+  if (${OPT})
+    target_compile_definitions(resilience PUBLIC ${OPT})
+  endif()
+endmacro()
+
+#Helper for making and exposing a basic option with optional dependencies
+#If dependencies are listed, this option is false unless dependencies are met
+macro(KR_OPTION OPT DESC DEFAULT)
+  set(DEPS "${ARGN}") #DEPS gets all extra arguments
+  if (DEPS)
+    message("cmake_dependent_option(${OPT} \"${DESC}\" ${DEFAULT} \"${DEPS}\" OFF)")
+    cmake_dependent_option(${OPT} "${DESC}" ${DEFAULT} "${DEPS}" OFF)
+  else()
+    message("option(${OPT} \"${DESC}\" ${DEFAULT})")
+    option(${OPT} "${DESC}" ${DEFAULT})
+  endif()
+  KR_EXPOSE_OPTION(${OPT})
+endmacro()
+
 
 option(KR_ALL_WARNINGS "Enable all warnings" ON)
 option(KR_WARNINGS_AS_ERRORS "Enable warnings as errors" ON)
@@ -31,107 +57,79 @@ target_include_directories(resilience PUBLIC
                            )
 
 find_package(Kokkos 4.0 REQUIRED)
+find_package(Boost REQUIRED)
 
 set_property(TARGET resilience PROPERTY CXX_STANDARD ${Kokkos_CXX_STANDARD})
+target_link_libraries(resilience PUBLIC Kokkos::kokkos Boost::boost)
 
-target_link_libraries(resilience PUBLIC Kokkos::kokkos)
+#Make individual variables for available Kokkos devices
+foreach(DEVICE ${Kokkos_DEVICES})
+  set(KR_${DEVICE}_DEVICE_ENABLED TRUE)
+  mark_as_advanced(KR_${DEVICE}_DEVICE_ENABLED)
+endforeach()
 
-option(KR_ENABLE_VELOC "use VeloC backend for automatic checkpointing" ON)
-option(KR_ENABLE_STDFILE "use StdFile backend for automatic checkpointing" ON)
+#Library options
+kr_option(KR_ENABLE_TRACING "Enable tracing of resilience functions" OFF)
+option(KR_ENABLE_TESTS "Enable tests in the build" ON)
+option(KR_ENABLE_EXAMPLES "Enable examples in the build" ON)
 
-include(CMakeDependentOption)
+#Automatic checkpointing options
+kr_option(KR_ENABLE_AUTOMATIC_CHECKPOINTING "Compile automatic checkpointing contexts and backends" ON)
+#Consistency contexts
+kr_option(KR_ENABLE_MPI_CONTEXT "Compile MPI checkpointing context" ON KR_ENABLE_AUTOMATIC_CHECKPOINTING)
+#Backends
+kr_option(KR_ENABLE_VELOC_BACKEND "Compile VeloC checkpointing backend" ON KR_ENABLE_MPI_CONTEXT)
+kr_option(KR_VELOC_BAREBONE "Use the barebone branch of VeloC" OFF KR_ENABLE_VELOC)
+
+#Data space options
+kr_option(KR_ENABLE_DATA_SPACES "Enable Kokkos memory spaces for manual view checkpointing" OFF)
+kr_option(KR_ENABLE_STDFILE_DATA_SPACE "Enable stdfile-based data space" ON KR_ENABLE_DATA_SPACES)
+kr_option(KR_ENABLE_HDF5_DATA_SPACE "Enable HDF5-based data space" OFF KR_ENABLE_DATA_SPACES)
+kr_option(KR_ENABLE_HDF5_PARALLEL "use parallel version of HDF5" OFF KR_ENABLE_HDF5_DATA_SPACE)
+
+#Exec space options
+kr_option(KR_ENABLE_EXEC_SPACES "enable resilient execution spaces" OFF)
+kr_option(KR_ENABLE_CUDA_EXEC_SPACE "enable the resilient CUDA execution space" ON "KR_ENABLE_EXEC_SPACES;KR_CUDA_DEVICE_ENABLED")
+kr_option(KR_ENABLE_OPENMP_EXEC_SPACE "enable the resilient OpenMP execution space" ON "KR_ENABLE_EXEC_SPACES;KR_OPENMP_DEVICE_ENABLED")
 
-cmake_dependent_option(KR_VELOC_BAREBONE "Use the barebone branch of VeloC" OFF "KR_ENABLE_VELOC" OFF)
 
 # VeloC backend
-if (KR_ENABLE_VELOC)
+if (KR_ENABLE_VELOC_BACKEND)
   find_package(veloc REQUIRED)
   target_link_libraries(resilience PUBLIC veloc::client)
-  target_compile_definitions(resilience PUBLIC KR_ENABLE_VELOC)
-  set(KR_ENABLE_MPI_BACKENDS ON)
-
-  if (KR_VELOC_BAREBONE)
-    target_compile_definitions(resilience PRIVATE KR_VELOC_BAREBONE)
-  endif()
-endif()
-
-# StdFile backend
-if (KR_ENABLE_STDFILE)
-  target_compile_definitions(resilience PUBLIC KR_ENABLE_STDFILE)
 endif()
 
-if (KR_ENABLE_MPI_BACKENDS)
-  target_compile_definitions(resilience PUBLIC KR_ENABLE_MPI_BACKENDS)
-endif()
-
-# Library options
-option(KR_ENABLE_TRACING "Enable tracing of resilience functions" OFF)
-if (KR_ENABLE_TRACING)
-  target_compile_definitions(resilience PUBLIC KR_ENABLE_TRACING)
-endif()
-
-option( KR_ENABLE_STDIO "use stdio for manual checkpoint" OFF )
-option( KR_ENABLE_HDF5 "add HDF5 support" OFF )
-option( KR_ENABLE_HDF5_PARALLEL "use parallel version of HDF5" OFF )
-
-if (KR_ENABLE_STDIO)
-  set(KR_ENABLE_MANUAL_CHECKPOINT ON)
-endif()
-
-if (KR_ENABLE_HDF5_PARALLEL)
-  set(KR_ENABLE_HDF5 ON)
-  target_compile_definitions(resilience PUBLIC KR_ENABLE_HDF5_PARALLEL)
-  set(KR_ENABLE_MANUAL_CHECKPOINT ON)
-endif()
-
-if (KR_ENABLE_HDF5)
+if (KR_ENABLE_HDF5_DATA_SPACE)
    find_package(HDF5 REQUIRED)
    target_link_libraries(resilience PUBLIC HDF5::HDF5)
-   target_compile_definitions(resilience PUBLIC KR_ENABLE_HDF5)
-   set(KR_ENABLE_MANUAL_CHECKPOINT ON)
-endif()
-
-if (KR_ENABLE_MANUAL_CHECKPOINT)
-  target_compile_definitions(resilience PUBLIC KR_ENABLE_MANUAL_CHECKPOINT)
 endif()
 
 # MPI requirement
-if (KR_ENABLE_VELOC OR KR_ENABLE_HDF5_PARALLEL)
+if (KR_ENABLE_MPI_CONTEXT OR KR_ENABLE_HDF5_PARALLEL)
    find_package(MPI REQUIRED)
    target_link_libraries(resilience PRIVATE MPI::MPI_CXX)
 endif()
 
-# Devices
-list(FIND Kokkos_DEVICES "CUDA" _kokkos_cuda_found)
-if (_kokkos_cuda_found GREATER -1)
-  set(KR_CUDA_DEVICE_ENABLED TRUE)
-  mark_as_advanced(KR_CUDA_DEVICE_ENABLED)
-endif()
-list(FIND Kokkos_DEVICES "OPENMP" _kokkos_omp_found)
-if (_kokkos_omp_found GREATER -1)
-  set(KR_OPENMP_DEVICE_ENABLED TRUE)
-  mark_as_advanced(KR_OPENMP_DEVICE_ENABLED)
-endif()
-
-option(KR_ENABLE_EXEC_SPACES "enable resilient execution spaces" OFF)
-cmake_dependent_option(KR_ENABLE_CUDA_EXEC_SPACE "enable the resilient CUDA execution space" ON "KR_ENABLE_EXEC_SPACES;KR_CUDA_DEVICE_ENABLED" OFF)
-cmake_dependent_option(KR_ENABLE_OPENMP_EXEC_SPACE "enable the resilient CUDA execution space" ON "KR_ENABLE_EXEC_SPACES;KR_OPENMP_DEVICE_ENABLED" OFF)
 
 if (KR_ENABLE_CUDA_EXEC_SPACE)
   message(STATUS "CUDA resilient execution spaces are enabled")
-  target_compile_definitions(resilience PUBLIC KR_ENABLE_CUDA_EXEC_SPACE)
 endif()
 
 if (KR_ENABLE_OPENMP_EXEC_SPACE)
   message(STATUS "OpenMP resilient execution spaces are enabled")
 endif()
 
-find_package(Boost REQUIRED)
-
-target_link_libraries(resilience PUBLIC Boost::boost)
 
 add_subdirectory(src)
 
+
+#Set variable values to expose to resilienceConfig.cmake
+set(KR_EXPOSED_OPTION_VALUES "")
+foreach (OPT ${KR_EXPOSED_OPTIONS})
+  list(APPEND KR_EXPOSED_OPTION_VALUES ${${OPT}})
+endforeach()
+
+
 # Export targets for in-tree linking
 export(TARGETS resilience
        NAMESPACE Kokkos::
@@ -171,22 +169,8 @@ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/resilienceConfig.cmake
 
 install(DIRECTORY src/resilience DESTINATION include FILES_MATCHING PATTERN "*.hpp")
 
-if (KR_ENABLE_HDF5)
-  install(FILES
-          ${CMAKE_MODULE_PATH}/FindHDF5.cmake
-          DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/resilience/Modules )
-
-  # Need to install/export HDF5 find module for downstream dependencies
-  configure_file(cmake/Modules/FindHDF5.cmake Modules/FindHDF5.cmake COPYONLY)
-endif()
-
-configure_file(src/resilience/config/Config.hpp.in ${CMAKE_CURRENT_BINARY_DIR}/src/resilience/config/Config.hpp @ONLY)
-install(FILES ${CMAKE_CURRENT_BINARY_DIR}/src/resilience/config/Config.hpp DESTINATION include/resilience/config)
 
 # Add subdirectories for examples and tests if they are enabled
-option(KR_ENABLE_TESTS "Enable tests in the build" ON)
-option(KR_ENABLE_EXAMPLES "Enable examples in the build" ON)
-
 add_subdirectory(tpl)
 
 if (KR_ENABLE_TESTS)

CMakePresets.json

@@ -14,11 +14,7 @@
           "type": "BOOL",
           "value": "OFF"
         },
-        "KR_ENABLE_VELOC": {
-          "type": "BOOL",
-          "value": "ON"
-        },
-        "KR_ENABLE_STDFILE": {
+        "KR_ENABLE_VELOC_BACKEND": {
           "type": "BOOL",
           "value": "ON"
         }

cmake/resilienceConfig.cmake.in

@@ -5,25 +5,25 @@ include(CMakeFindDependencyMacro)
 
 include("${CMAKE_CURRENT_LIST_DIR}/resilienceTargets.cmake")
 
-set(KR_ENABLE_HDF5 @KR_ENABLE_HDF5@)
-set(KR_ENABLE_VELOC @KR_ENABLE_VELOC@)
-set(KR_ENABLE_EXEC_SPACES @KR_ENABLE_EXEC_SPACES@)
-set(KR_ENABLE_CUDA_EXEC_SPACE @KR_ENABLE_CUDA_EXEC_SPACE@)
-set(KR_ENABLE_OPENMP_EXEC_SPACE @KR_ENABLE_OPENMP_EXEC_SPACE@)
+#All options defined with kr_option are exposed to linking targets' CMakeLists
+set(KR_EXPOSED_OPTIONS @KR_EXPOSED_OPTIONS@)
+set(KR_EXPOSED_OPTION_VALUES @KR_EXPOSED_OPTION_VALUES@)
+foreach (OPT in ZIP_LISTS KR_EXPOSED_OPTIONS KR_EXPOSED_OPTION_VALUES)
+   set(${OPT_1} ${OPT_2})
+endforeach()
 
 # VeloC needs to add a cmake config...
 LIST(APPEND CMAKE_MODULE_PATH "${CMAKE_CURRENT_LIST_DIR}/Modules/")
 message(STATUS "Module path: ${CMAKE_MODULE_PATH}")
 
 find_dependency(Kokkos REQUIRED NO_CMAKE_PACKAGE_REGISTRY HINTS @Kokkos_DIR@)
 
-if (@KR_ENABLE_VELOC@)
+if (KR_ENABLE_VELOC_BACKEND)
    set(veloc_DIR @veloc_DIR@)
-   set(KR_VELOC_BAREBONE @KR_VELOC_BAREBONE@)
    find_dependency(veloc REQUIRED)
 endif()
 
-if (@KR_ENABLE_HDF5@)
+if (KR_ENABLE_HDF5_DATA_SPACE)
    set(HDF5_DIR @HDF5_DIR@)
    find_dependency(HDF5 REQUIRED)
 endif()

src/resilience/AutomaticCheckpoint.hpp

@@ -53,7 +53,7 @@
 #include "view_hooks/DynamicViewHooks.hpp"
 
 #include "Cref.hpp"
-#include "CheckpointFilter.hpp"
+#include "context/CheckpointFilter.hpp"
 
 // Tracing support
 #ifdef KR_ENABLE_TRACING

src/resilience/CMakeLists.txt

@@ -1,39 +1,24 @@
-target_sources(resilience PRIVATE
-               ${CMAKE_CURRENT_LIST_DIR}/Resilience.cpp
-               ${CMAKE_CURRENT_LIST_DIR}/AutomaticCheckpoint.cpp
-               ${CMAKE_CURRENT_LIST_DIR}/Context.cpp
-               ${CMAKE_CURRENT_LIST_DIR}/Config.cpp
-               ${CMAKE_CURRENT_LIST_DIR}/Cref.cpp
-               ${CMAKE_CURRENT_LIST_DIR}/ResilientRef.cpp
-               )
-
-if (KR_ENABLE_MPI_BACKENDS)
-  target_sources(resilience PRIVATE MPIContext.cpp)
-endif()
-
-add_subdirectory(filesystem)
-add_subdirectory(stdio)
-
-if (KR_ENABLE_VELOC)
-  add_subdirectory(veloc)
+target_sources(resilience PRIVATE ${CMAKE_CURRENT_LIST_DIR}/Resilience.cpp)
+
+if (KR_ENABLE_AUTOMATIC_CHECKPOINTING)
+  target_sources(resilience PRIVATE 
+                 ${CMAKE_CURRENT_LIST_DIR}/config/Config.cpp
+                 ${CMAKE_CURRENT_LIST_DIR}/Cref.cpp
+                 )
+  add_subdirectory(backend)
+  add_subdirectory(context)
 endif()
 
-if (KR_ENABLE_STDFILE)
-  target_sources(resilience PRIVATE StdFileContext.cpp)
-  add_subdirectory(stdfile)
+if (KR_ENABLE_EXEC_SPACES)
+  add_subdirectory(exec_space)
 endif()
 
-if (KR_ENABLE_HDF5)
-  add_subdirectory(hdf5)
-endif()
-
-add_subdirectory(view_hooks)
-
-if (KR_ENABLE_CUDA_EXEC_SPACE)
-  add_subdirectory(cuda)
+if (KR_ENABLE_AUTOMATIC_CHECKPOINTING OR KR_ENABLE_EXEC_SPACES)
+  add_subdirectory(view_hooks)
 endif()
 
-if (KR_ENABLE_OPENMP_EXEC_SPACE)
-  add_subdirectory(openMP)
+if (KR_ENABLE_DATA_SPACES)
+  add_subdirectory(data_space)
 endif()
 
+add_subdirectory(util)

src/resilience/Resilience.hpp

@@ -45,23 +45,10 @@
 
 #include <resilience/config/Config.hpp>
 
-#include "Context.hpp"
-#include "ManualCheckpoint.hpp"
-
-#ifdef KR_ENABLE_VELOC
-#include "veloc/VelocBackend.hpp"
-#include "AutomaticCheckpoint.hpp"
-#endif
-
-#ifdef KR_ENABLE_STDFILE
-#include "stdfile/StdFileBackend.hpp"
-#include "AutomaticCheckpoint.hpp"
-#endif
-
-#ifdef KR_ENABLE_CUDA_EXEC_SPACE
-#include "cuda/ResCuda.hpp"
-#include "cuda/ResCudaSpace.hpp"
-#include "cuda/CudaResParallel.hpp"
+#ifdef KR_ENABLE_AUTOMATIC_CHECKPOINTING
+#include "resilience/context/Context.hpp"
+#include "resilience/backend/Backend.hpp"
+#include "resilience/AutomaticCheckpoint.hpp"
 #endif
 
 namespace KokkosResilience {
@@ -75,4 +62,12 @@ void set_unrecoverable_data_corruption_handler(unrecoverable_data_corruption_han
 unrecoverable_data_corruption_handler &get_unrecoverable_data_corruption_handler();
 }  // namespace KokkosResilience
 
+#ifdef KR_ENABLE_EXEC_SPACES
+#include "resilience/exec_space/ExecSpace.hpp"
+#endif
+
+#ifdef KR_ENABLE_DATA_SPACES
+#include "resilience/data_space/DataSpace.hpp"
+#endif
+
 #endif  // INC_RESILIENCE_RESILIENCE_HPP