[pre-commit.ci] auto fixes from pre-commit.com hooks

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geneplexus/__init__.py

@@ -125,6 +125,7 @@
 analysis *cannot* be done due to the lack to pretrained models.
 
 """
+
 from ._config import config  # noreorder
 from . import download
 from . import util

geneplexus/_config/__init__.py

@@ -1,4 +1,5 @@
 """Basic configurations."""
+
 from . import config
 from .logger_util import make_logger
 

geneplexus/_config/config.py

@@ -1,4 +1,5 @@
 """Global variables used by the GenePlexus library."""
+
 import os.path as osp
 import pathlib
 from typing import Any

geneplexus/_config/logger_util.py

@@ -1,4 +1,5 @@
 """Logger utilities."""
+
 import logging
 from contextlib import contextmanager
 from typing import Optional

geneplexus/cli.py

@@ -1,4 +1,5 @@
 """Command line interface for the GenePlexus pipeline."""
+
 import argparse
 import atexit
 import os

geneplexus/custom.py

@@ -1,4 +1,5 @@
 """Helper functions for setting up custom networks and GSCs."""
+
 import json
 import os.path as osp
 

geneplexus/download.py

@@ -1,4 +1,5 @@
 """Data download module."""
+
 import io
 import os.path as osp
 import time

geneplexus/geneplexus.py

@@ -1,4 +1,5 @@
 """GenePlexus API."""
+
 import os
 import os.path as osp
 import warnings

geneplexus/util.py

@@ -1,4 +1,5 @@
 """Utilities including file and path handling."""
+
 import functools
 import json
 import os