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updated RTD parameter option table
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ChristopherMancuso committed Nov 25, 2024
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15 changes: 4 additions & 11 deletions docs/source/notes/data.rst
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Expand Up @@ -8,13 +8,13 @@ PyGenePlexus comes with pre-processed data that can be downloaded
using :meth:`geneplexus.download.download_select_data` or directly
from `Zenodo <https://zenodo.org/records/14149956>`_.

**All data options:**
**All options:**

======== =======================================================
Networks [BioGRID]_, [STRING]_, [IMP]_
Species Human, Mouse, Zebrafish, Worm, Fly, Yeast
Features :term:`SixSpeciesN2V`
GSCs [GO]_, [Monarch]_, [Mondo]_
GSCs [GO]_, [Monarch]_, [Mondo]_, Combined
======== =======================================================

Due to the availability of the data, the following combinations are supported:
Expand Down Expand Up @@ -82,18 +82,11 @@ Due to the availability of the data, the following combinations are supported:
- ❌
- ❌
- ❌
* - Combined
- ✅
- ✅
- ❌
- ✅
- ✅
- ✅

.. note::

For a given species, if two or more gene set collections are available,
Combined is the union of all sets across those collections.
The Combined option for the GSC selection utilizes all available GSC
options for a given species.

Custom Data
------------
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