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58 Open 143 Closed
58 Open 143 Closed
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Issues list

create hierarchical splitter
#501 opened Nov 21, 2024 by falquaddoomi
create term hold-out scenario.
#498 opened Sep 18, 2024 by kmanpearl
1
HPO creates empty label set collection
#497 opened Aug 26, 2024 by kmanpearl
OboTermIncompleteError when processing mondo in specific directory
#496 opened Jul 31, 2024 by kmanpearl
2
multiple connected components in mondo ontology
#495 opened Jul 31, 2024 by kmanpearl
Option to fall back to downloading from latest if current or the version provided is not available.
#486 opened Dec 6, 2023 by RemyLau
Archive more adata options
#485 opened Dec 6, 2023 by RemyLau
Remove obselete terms in ontologies (filtering)
#483 opened Nov 27, 2023 by RemyLau
Add option for weighted to be inferred (SparseGraph from npz, etc.)
#463 opened Aug 20, 2023 by RemyLau
Potentially issue when saving directed edge list (compact..)
#462 opened Aug 16, 2023 by RemyLau
Combine .get_y and .split; consolidate supervised and gnn trainers regarding handling of negatives
#409 opened Apr 11, 2023 by RemyLau
1
Add progress bar to restrict_to_branch
#384 opened Feb 14, 2023 by RemyLau
Make a dense mode for loading graph from CX
#345 opened Jan 13, 2023 by RemyLau
Add link to data source webpage, and to NDEx when appliacble
#344 opened Jan 12, 2023 by RemyLau
Implement DGL dataloader
#343 opened Jan 12, 2023 by RemyLau
Add networkx as a choice of graph backend
#340 opened Jan 12, 2023 by RemyLau
2 tasks
Display time left before retrying log
#312 opened Oct 2, 2022 by RemyLau
Improve data release
#292 opened Sep 9, 2022 by RemyLau
5 tasks
v0.1.0 rc
Set up mechanism to auto update test data stats for new data release
#291 opened Sep 9, 2022 by RemyLau
Log check point stats after each filtering step to file (currently only log to screen)
#290 opened Sep 9, 2022 by RemyLau
Add summary sheet for data release and upload to archive along with data in each data release
#289 opened Sep 9, 2022 by RemyLau
Ubiquitous entity filtering based on percentage of occurance enhancement New feature or request
#288 opened Sep 9, 2022 by RemyLau
Negative mask enhancement New feature or request
#287 opened Sep 9, 2022 by RemyLau
Refactor transform refactor
#285 opened Sep 6, 2022 by RemyLau
2 tasks
Validate and summarize data stats at the end of release data processing
#276 opened Sep 5, 2022 by RemyLau
ProTip! Exclude everything labeled bug with -label:bug.