Acknowledgements

The methods and algorithms provided with Sepia are contributed by:

MEDI Toolbox developed by
Weill Cornell MRI lab

• DICOM reader
• Matlab interface of using FSL's brain extraction
• Combination of echo phase using non-linear fitting
• Laplacian phase unwrapping
• Region growing phase unwrapping
• Graphcut phase unwrapping
• Laplacian boundary value (LBV) background field removal
• Projection onto dipole field (PDF) background field removal
• Morphology enabled dipole inversion QSM
• Lateral ventricle masking

STI Suite developed by
Hongjiang Wei, PhD - University of California Berkeley, CA, USA
Wei Li, PhD, - University Texas Health Science Center at San Antonio Research Imaging Institute, San Antonio, TX, USA
Chunlei Liu, PhD - University of California Berkeley, CA, USA

• Laplacian phase unwrapping
• VSHARP background field removal
• iHARPERELLA background field removal
• iLSQR QSM
• Star-QSM

FANSI Toolbox developed by
Carlos Milovic, PhD - Biomedical Imaging Center at Pontificia Universidad Católica de Chile
Berkin Bilgic, PhD - Martinos Center for Biomedical Imaging, Harvard Medical School, MA, USA
Bo Zhao, PhD - Martinos Center for Biomedical Imaging, Harvard Medical School, MA, USA
Julio Acosta-Cabronero, PhD - Wellcome Trust Centre for Neuroimaging, Institute of Neurology, University College London, London, UK, and German Center for Neurodegenerative Diseases (DZNE), Magdeburg, Germany
Cristian Tejos, PhD - Department of Electrical Engineering, Pontificia Universidad Catolica de Chile, Santiago, Chile and the Biomedical Imaging Center at Pontificia Universidad Católica de Chile

• FANSI QSM (including both linear and non-linear solvers, and TV and TGV regularisation options)