changing the fix argumnet max_seqlets and window

kundajelab · Oct 28, 2023 · f058fa1 · f058fa1
1 parent 4ba0dd7
commit f058fa1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/chrombpnet/CHROMBPNET.py b/chrombpnet/CHROMBPNET.py
@@ -88,7 +88,7 @@ def main():
 		chrombpnet_src_dir = os.path.dirname(chrombpnet.__file__)
 		meme_file=get_default_data_path(DefaultDataFile.motifs_meme)
 
-		modisco_command = "modisco motifs -i {} -n 50000 -o {} -w 500".format(args.h5py,args.output_prefix+"_modisco.h5")
+		modisco_command = "modisco motifs -i {} -n {} -o {} -w {}".format(args.h5py, args.max_seqlets, args.output_prefix+"_modisco.h5", args.window)
 		os.system(modisco_command)
 		modisco_command = "modisco report -i {} -o {} -m {}".format(args.output_prefix+"_modisco.h5",args.output_prefix+"_reports",meme_file)
 		os.system(modisco_command)