sib_riken_collabotation

List of SPARQL queries example for RIKEN BioResource MetaDatabase.

SPARQL endpoint: https://knowledge.brc.riken.jp/sparql

Query examples

01. queryExample01.rq

Get RIKEN BRC mice having Mammalian Phenotype Ontology (MP) terms.

02. queryExample02.rq

Get the RIKEN BRC mouse and its genetically modified or mutated mouse gene that is an orthologue of the human gene (ENSG00000109084).

• 02-01. queriyExample02_fedrated01.rq

• [Using federated query01] Get the RIKEN BRC mouse and its genetically modified or mutated mouse gene that is an orthologue of the human gene (ENSG00000109084).

• 02-02. queriyExample02_fedrated02.rq

• [Using federated query02] Get the RIKEN BRC mouse and its genetically modified or mutated mouse gene that is an orthologue of the human gene (ENSG00000109084).

03. queryExample03.rq

Get ChEBI chemicals with the role of inflammatory agent (chebi:67079).

04. queryExample04.rq

Get RIKEN BRC plant DNA resources that catalyse chemicals with the role of inflammatory agent (chebi:67079), their gene IDs and UniProt accession numbers.

05. queryExample05.rq

Get UniProt accession numbers classified to molecular function of Gene Ontology.

06. queryExample06.rq

Get human DNA materials relevant to the biological process of cuticle development (go:0042335).

07. queryExample07.rq

Get microbial strains from the Japan Collection of Microorganisms (JCM) whose optimum growth temperature is 75 degrees Celsius or higher.

08. queryExample08.rq

Get Alzheimer disease type 1(AD1) related genes whose expression levels are 99.7 or higher.

09. queryExample09.rq

Get patient-derived RIKEN BRC iPS cells (e.g., Wilson disease, DOID:893)